Hb_003549_160

Information

Type -
Description -
Location Contig3549: 129252-132352
Sequence    

Annotation

kegg
ID rcu:RCOM_1435750
description Protein FAM18B, putative
nr
ID XP_002512539.1
description Protein FAM18B, putative [Ricinus communis]
swissprot
ID Q8LEK2
description Golgi apparatus membrane protein-like protein ECHIDNA OS=Arabidopsis thaliana GN=ECH PE=1 SV=1
trembl
ID B9RFM0
description Golgi apparatus membrane protein TVP23 OS=Ricinus communis GN=RCOM_1435750 PE=3 SV=1
Gene Ontology
ID GO:0000139
description golgi apparatus membrane protein echidna

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36782: 129273-132366
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003549_160 0.0 - - Protein FAM18B, putative [Ricinus communis]
2 Hb_002986_100 0.0646552969 - - PREDICTED: uncharacterized protein LOC105639686 [Jatropha curcas]
3 Hb_001720_040 0.0757601229 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001153_210 0.0837955295 - - PREDICTED: uncharacterized protein LOC105645887 isoform X1 [Jatropha curcas]
5 Hb_000111_170 0.0853068226 - - PREDICTED: uncharacterized protein LOC105631234 isoform X1 [Jatropha curcas]
6 Hb_000336_210 0.0856266554 - - PREDICTED: probable adenylate kinase 7, mitochondrial [Jatropha curcas]
7 Hb_000803_270 0.0881332088 - - PREDICTED: nuclear cap-binding protein subunit 1 [Jatropha curcas]
8 Hb_001221_440 0.090424232 - - PREDICTED: SUMO-activating enzyme subunit 1B-1 isoform X1 [Jatropha curcas]
9 Hb_057688_010 0.093291459 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 isoform X2 [Jatropha curcas]
10 Hb_000373_050 0.093583257 - - PREDICTED: protein WHI3 [Jatropha curcas]
11 Hb_171900_090 0.0940911854 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000260_630 0.0957608379 - - PREDICTED: altered inheritance rate of mitochondria protein 25 isoform X1 [Jatropha curcas]
13 Hb_000019_190 0.0959667412 - - hypothetical protein POPTR_0002s23900g [Populus trichocarpa]
14 Hb_000875_080 0.096471416 - - PREDICTED: (+)-delta-cadinene synthase isozyme XC14-like isoform X2 [Gossypium raimondii]
15 Hb_000006_010 0.0967582942 - - conserved hypothetical protein [Ricinus communis]
16 Hb_163175_010 0.0977707498 - - hypothetical protein CISIN_1g036035mg, partial [Citrus sinensis]
17 Hb_000329_800 0.0978769639 - - conserved hypothetical protein [Ricinus communis]
18 Hb_183433_010 0.1000169266 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
19 Hb_000363_310 0.1002284584 - - DNA topoisomerase type I, putative [Ricinus communis]
20 Hb_000905_110 0.1002355505 - - arginine/serine rich splicing factor sf4/14, putative [Ricinus communis]

Gene co-expression network

sample Hb_003549_160 Hb_003549_160 Hb_002986_100 Hb_002986_100 Hb_003549_160--Hb_002986_100 Hb_001720_040 Hb_001720_040 Hb_003549_160--Hb_001720_040 Hb_001153_210 Hb_001153_210 Hb_003549_160--Hb_001153_210 Hb_000111_170 Hb_000111_170 Hb_003549_160--Hb_000111_170 Hb_000336_210 Hb_000336_210 Hb_003549_160--Hb_000336_210 Hb_000803_270 Hb_000803_270 Hb_003549_160--Hb_000803_270 Hb_002986_100--Hb_001720_040 Hb_000976_140 Hb_000976_140 Hb_002986_100--Hb_000976_140 Hb_005867_070 Hb_005867_070 Hb_002986_100--Hb_005867_070 Hb_014834_150 Hb_014834_150 Hb_002986_100--Hb_014834_150 Hb_002986_100--Hb_001153_210 Hb_001456_060 Hb_001456_060 Hb_002986_100--Hb_001456_060 Hb_001720_040--Hb_005867_070 Hb_001089_030 Hb_001089_030 Hb_001720_040--Hb_001089_030 Hb_004837_180 Hb_004837_180 Hb_001720_040--Hb_004837_180 Hb_000710_040 Hb_000710_040 Hb_001720_040--Hb_000710_040 Hb_007590_020 Hb_007590_020 Hb_001720_040--Hb_007590_020 Hb_138435_010 Hb_138435_010 Hb_001153_210--Hb_138435_010 Hb_001153_210--Hb_005867_070 Hb_003861_050 Hb_003861_050 Hb_001153_210--Hb_003861_050 Hb_004020_040 Hb_004020_040 Hb_001153_210--Hb_004020_040 Hb_000339_040 Hb_000339_040 Hb_001153_210--Hb_000339_040 Hb_000085_210 Hb_000085_210 Hb_000111_170--Hb_000085_210 Hb_000363_310 Hb_000363_310 Hb_000111_170--Hb_000363_310 Hb_001221_440 Hb_001221_440 Hb_000111_170--Hb_001221_440 Hb_030414_040 Hb_030414_040 Hb_000111_170--Hb_030414_040 Hb_005288_070 Hb_005288_070 Hb_000111_170--Hb_005288_070 Hb_183433_010 Hb_183433_010 Hb_000111_170--Hb_183433_010 Hb_000905_110 Hb_000905_110 Hb_000336_210--Hb_000905_110 Hb_000875_080 Hb_000875_080 Hb_000336_210--Hb_000875_080 Hb_000336_210--Hb_014834_150 Hb_002272_050 Hb_002272_050 Hb_000336_210--Hb_002272_050 Hb_171900_090 Hb_171900_090 Hb_000336_210--Hb_171900_090 Hb_000297_160 Hb_000297_160 Hb_000336_210--Hb_000297_160 Hb_004109_320 Hb_004109_320 Hb_000803_270--Hb_004109_320 Hb_023313_040 Hb_023313_040 Hb_000803_270--Hb_023313_040 Hb_000006_010 Hb_000006_010 Hb_000803_270--Hb_000006_010 Hb_002889_010 Hb_002889_010 Hb_000803_270--Hb_002889_010 Hb_000702_090 Hb_000702_090 Hb_000803_270--Hb_000702_090 Hb_183510_020 Hb_183510_020 Hb_000803_270--Hb_183510_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.90582 5.86626 10.0269 6.36852 7.60294 6.83724
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.31864 8.17026 3.27387 6.61925 6.87695

CAGE analysis