Hb_003551_010

Information

Type -
Description -
Location Contig3551: 8982-10098
Sequence    

Annotation

kegg
ID pop:POPTR_0014s17770g
description hypothetical protein
nr
ID KDO85372.1
description hypothetical protein CISIN_1g030786mg [Citrus sinensis]
swissprot
ID Q6DFN1
description NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 OS=Xenopus tropicalis GN=ndufaf3 PE=2 SV=1
trembl
ID A0A067HBZ3
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030786mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36787: 9262-29803
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003551_010 0.0 - - hypothetical protein CISIN_1g030786mg [Citrus sinensis]
2 Hb_002388_010 0.156144006 - - -
3 Hb_009051_020 0.160836726 - - Thioredoxin O1 [Morus notabilis]
4 Hb_013394_100 0.1743168076 - - PREDICTED: uncharacterized protein LOC105135144 [Populus euphratica]
5 Hb_000111_030 0.1863253991 - - PREDICTED: uncharacterized protein LOC104094030 [Nicotiana tomentosiformis]
6 Hb_066913_010 0.1914543527 - - hypothetical protein POPTR_0006s03150g [Populus trichocarpa]
7 Hb_182713_020 0.1973271192 - - PREDICTED: vesicle-associated membrane protein 727 [Setaria italica]
8 Hb_004669_030 0.1982368904 - - -
9 Hb_003206_100 0.1998043281 - - -
10 Hb_000671_120 0.2030642639 - - hypothetical protein JCGZ_23777 [Jatropha curcas]
11 Hb_002344_130 0.2050160193 - - PREDICTED: copper transporter 5 [Jatropha curcas]
12 Hb_000253_030 0.2109017973 - - hypothetical protein JCGZ_23039 [Jatropha curcas]
13 Hb_002192_090 0.216276233 - - hypothetical protein AMTR_s00029p00055000 [Amborella trichopoda]
14 Hb_002656_020 0.2182318189 desease resistance Gene Name: NB-ARC ATP binding protein, putative [Ricinus communis]
15 Hb_000015_070 0.2187556993 - - hypothetical protein POPTR_0001s22690g [Populus trichocarpa]
16 Hb_021888_040 0.2189372708 - - PREDICTED: uncharacterized protein LOC103499290 isoform X2 [Cucumis melo]
17 Hb_000363_330 0.2207585173 - - -
18 Hb_108227_010 0.2230141771 - - RecName: Full=Profilin-2; AltName: Full=Pollen allergen Hev b 8.0102; AltName: Allergen=Hev b 8.0102 [Hevea brasiliensis]
19 Hb_000481_050 0.2232445931 - - PREDICTED: uncharacterized protein LOC105636546 [Jatropha curcas]
20 Hb_011200_010 0.224941308 - - -

Gene co-expression network

sample Hb_003551_010 Hb_003551_010 Hb_002388_010 Hb_002388_010 Hb_003551_010--Hb_002388_010 Hb_009051_020 Hb_009051_020 Hb_003551_010--Hb_009051_020 Hb_013394_100 Hb_013394_100 Hb_003551_010--Hb_013394_100 Hb_000111_030 Hb_000111_030 Hb_003551_010--Hb_000111_030 Hb_066913_010 Hb_066913_010 Hb_003551_010--Hb_066913_010 Hb_182713_020 Hb_182713_020 Hb_003551_010--Hb_182713_020 Hb_002388_010--Hb_000111_030 Hb_002192_090 Hb_002192_090 Hb_002388_010--Hb_002192_090 Hb_133724_010 Hb_133724_010 Hb_002388_010--Hb_133724_010 Hb_002388_010--Hb_066913_010 Hb_073799_010 Hb_073799_010 Hb_002388_010--Hb_073799_010 Hb_003206_100 Hb_003206_100 Hb_009051_020--Hb_003206_100 Hb_007273_020 Hb_007273_020 Hb_009051_020--Hb_007273_020 Hb_021888_040 Hb_021888_040 Hb_009051_020--Hb_021888_040 Hb_163599_010 Hb_163599_010 Hb_009051_020--Hb_163599_010 Hb_000253_030 Hb_000253_030 Hb_009051_020--Hb_000253_030 Hb_013394_100--Hb_182713_020 Hb_000789_150 Hb_000789_150 Hb_013394_100--Hb_000789_150 Hb_099298_010 Hb_099298_010 Hb_013394_100--Hb_099298_010 Hb_002079_040 Hb_002079_040 Hb_013394_100--Hb_002079_040 Hb_011200_010 Hb_011200_010 Hb_013394_100--Hb_011200_010 Hb_108227_010 Hb_108227_010 Hb_013394_100--Hb_108227_010 Hb_130613_010 Hb_130613_010 Hb_000111_030--Hb_130613_010 Hb_001747_030 Hb_001747_030 Hb_000111_030--Hb_001747_030 Hb_000111_030--Hb_182713_020 Hb_002344_130 Hb_002344_130 Hb_000111_030--Hb_002344_130 Hb_000111_030--Hb_002192_090 Hb_002687_080 Hb_002687_080 Hb_066913_010--Hb_002687_080 Hb_066913_010--Hb_133724_010 Hb_066913_010--Hb_002192_090 Hb_000363_330 Hb_000363_330 Hb_066913_010--Hb_000363_330 Hb_145629_010 Hb_145629_010 Hb_066913_010--Hb_145629_010 Hb_188313_010 Hb_188313_010 Hb_182713_020--Hb_188313_010 Hb_009083_030 Hb_009083_030 Hb_182713_020--Hb_009083_030 Hb_182713_020--Hb_073799_010 Hb_011287_040 Hb_011287_040 Hb_182713_020--Hb_011287_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.0955 10.3046 3.3189 69.0722 8.3897 33.796
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.1427 24.1306 1.43065 1.22915 1.45448

CAGE analysis