Hb_003551_020

Information

Type -
Description -
Location Contig3551: 29537-34273
Sequence    

Annotation

kegg
ID pop:POPTR_0014s17760g
description POPTRDRAFT_732662; hypothetical protein
nr
ID XP_012083775.1
description PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JYF8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14693 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36787: 9262-29803
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003551_020 0.0 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like isoform X1 [Jatropha curcas]
2 Hb_000019_230 0.0586839434 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
3 Hb_000977_080 0.0597560658 - - type II inositol 5-phosphatase, putative [Ricinus communis]
4 Hb_000045_130 0.062568473 - - 60S acidic ribosomal protein P0A [Hevea brasiliensis]
5 Hb_000392_270 0.0648369178 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
6 Hb_003878_190 0.0752757422 - - hypothetical protein POPTR_0011s11040g [Populus trichocarpa]
7 Hb_000154_080 0.0753556744 transcription factor TF Family: bZIP PREDICTED: probable transcription factor PosF21 [Jatropha curcas]
8 Hb_026198_050 0.0765588039 - - PREDICTED: subtilisin-like protease SBT3.3 [Jatropha curcas]
9 Hb_001369_650 0.078313287 - - PREDICTED: chloride conductance regulatory protein ICln [Jatropha curcas]
10 Hb_009767_120 0.0783427667 - - PREDICTED: probable prefoldin subunit 2 [Jatropha curcas]
11 Hb_004645_050 0.0847381673 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 [Jatropha curcas]
12 Hb_125000_010 0.0848185011 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
13 Hb_009711_030 0.0854808713 - - PREDICTED: uncharacterized protein LOC105647792 isoform X1 [Jatropha curcas]
14 Hb_000188_100 0.0861009414 - - PREDICTED: protein YIPF5 homolog [Jatropha curcas]
15 Hb_003001_060 0.0879184683 - - wound-responsive family protein [Populus trichocarpa]
16 Hb_000928_240 0.0883067813 - - PREDICTED: uncharacterized protein LOC105632515 [Jatropha curcas]
17 Hb_011537_010 0.0884471047 - - PREDICTED: uncharacterized protein LOC105646226 [Jatropha curcas]
18 Hb_001019_090 0.0897953961 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
19 Hb_000808_040 0.0901575159 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 3 [Jatropha curcas]
20 Hb_159558_030 0.0906507479 - - ubiquitin-conjugating enzyme E2 variant 1D [Jatropha curcas]

Gene co-expression network

sample Hb_003551_020 Hb_003551_020 Hb_000019_230 Hb_000019_230 Hb_003551_020--Hb_000019_230 Hb_000977_080 Hb_000977_080 Hb_003551_020--Hb_000977_080 Hb_000045_130 Hb_000045_130 Hb_003551_020--Hb_000045_130 Hb_000392_270 Hb_000392_270 Hb_003551_020--Hb_000392_270 Hb_003878_190 Hb_003878_190 Hb_003551_020--Hb_003878_190 Hb_000154_080 Hb_000154_080 Hb_003551_020--Hb_000154_080 Hb_003120_060 Hb_003120_060 Hb_000019_230--Hb_003120_060 Hb_003038_030 Hb_003038_030 Hb_000019_230--Hb_003038_030 Hb_000188_100 Hb_000188_100 Hb_000019_230--Hb_000188_100 Hb_000019_230--Hb_000977_080 Hb_004195_160 Hb_004195_160 Hb_000019_230--Hb_004195_160 Hb_000977_080--Hb_000392_270 Hb_000977_080--Hb_000045_130 Hb_004645_050 Hb_004645_050 Hb_000977_080--Hb_004645_050 Hb_001369_650 Hb_001369_650 Hb_000977_080--Hb_001369_650 Hb_000045_130--Hb_001369_650 Hb_000045_130--Hb_000392_270 Hb_005489_130 Hb_005489_130 Hb_000045_130--Hb_005489_130 Hb_000045_130--Hb_000019_230 Hb_000392_270--Hb_001369_650 Hb_003540_040 Hb_003540_040 Hb_000392_270--Hb_003540_040 Hb_000392_270--Hb_003878_190 Hb_011360_140 Hb_011360_140 Hb_000392_270--Hb_011360_140 Hb_003001_060 Hb_003001_060 Hb_003878_190--Hb_003001_060 Hb_001824_070 Hb_001824_070 Hb_003878_190--Hb_001824_070 Hb_000928_240 Hb_000928_240 Hb_003878_190--Hb_000928_240 Hb_009711_030 Hb_009711_030 Hb_003878_190--Hb_009711_030 Hb_003878_190--Hb_000977_080 Hb_000154_080--Hb_003878_190 Hb_002685_190 Hb_002685_190 Hb_000154_080--Hb_002685_190 Hb_015978_060 Hb_015978_060 Hb_000154_080--Hb_015978_060 Hb_000007_100 Hb_000007_100 Hb_000154_080--Hb_000007_100 Hb_001221_410 Hb_001221_410 Hb_000154_080--Hb_001221_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.0333 5.32676 2.62409 4.25124 14.4296 14.4771
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.6187 18.0199 7.93312 3.55891 1.93409

CAGE analysis