Hb_003551_040

Information

Type -
Description -
Location Contig3551: 91434-98959
Sequence    

Annotation

kegg
ID pmum:103331076
description uncharacterized LOC103331076
nr
ID XP_008231914.1
description PREDICTED: uncharacterized protein LOC103331076 [Prunus mume]
swissprot
ID -
description -
trembl
ID M5VVG0
description Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa021910mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36790: 97346-97760
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003551_040 0.0 - - PREDICTED: uncharacterized protein LOC103331076 [Prunus mume]
2 Hb_154381_010 0.0086367204 - - -
3 Hb_002311_460 0.1365607818 - - ubiquitin-protein ligase, putative [Ricinus communis]
4 Hb_001832_220 0.1381825822 - - -
5 Hb_030885_020 0.1721494503 - - -
6 Hb_012539_090 0.1753227302 - - PREDICTED: LOW QUALITY PROTEIN: U-box domain-containing protein 26, partial [Eucalyptus grandis]
7 Hb_000737_020 0.2170751055 - - -
8 Hb_000078_160 0.2504633167 - - PREDICTED: protein LURP-one-related 12-like [Jatropha curcas]
9 Hb_060585_010 0.2534158444 - - unnamed protein product [Coffea canephora]
10 Hb_001890_030 0.260261541 - - -
11 Hb_004242_210 0.2800498155 - - PREDICTED: uncharacterized protein LOC105633248 [Jatropha curcas]
12 Hb_004885_020 0.2843923841 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like isoform X1 [Jatropha curcas]
13 Hb_172572_010 0.2847135198 - - PREDICTED: ubiquitin thioesterase otubain-like [Jatropha curcas]
14 Hb_005597_010 0.2990804683 - - -
15 Hb_094437_010 0.3044188396 - - -
16 Hb_002368_090 0.3105438136 - - PREDICTED: cationic peroxidase 1-like [Populus euphratica]
17 Hb_004907_040 0.3151697607 - - hypothetical protein POPTR_0011s079751g, partial [Populus trichocarpa]
18 Hb_000640_110 0.3192940162 - - -
19 Hb_021068_030 0.3203176788 transcription factor TF Family: M-type hypothetical protein B456_010G032700 [Gossypium raimondii]
20 Hb_001916_010 0.3256398676 - - hypothetical protein VITISV_021527 [Vitis vinifera]

Gene co-expression network

sample Hb_003551_040 Hb_003551_040 Hb_154381_010 Hb_154381_010 Hb_003551_040--Hb_154381_010 Hb_002311_460 Hb_002311_460 Hb_003551_040--Hb_002311_460 Hb_001832_220 Hb_001832_220 Hb_003551_040--Hb_001832_220 Hb_030885_020 Hb_030885_020 Hb_003551_040--Hb_030885_020 Hb_012539_090 Hb_012539_090 Hb_003551_040--Hb_012539_090 Hb_000737_020 Hb_000737_020 Hb_003551_040--Hb_000737_020 Hb_154381_010--Hb_002311_460 Hb_154381_010--Hb_001832_220 Hb_154381_010--Hb_030885_020 Hb_154381_010--Hb_012539_090 Hb_154381_010--Hb_000737_020 Hb_002311_460--Hb_000737_020 Hb_002311_460--Hb_001832_220 Hb_000078_160 Hb_000078_160 Hb_002311_460--Hb_000078_160 Hb_004885_020 Hb_004885_020 Hb_002311_460--Hb_004885_020 Hb_001832_220--Hb_012539_090 Hb_001832_220--Hb_000737_020 Hb_011609_200 Hb_011609_200 Hb_001832_220--Hb_011609_200 Hb_004770_060 Hb_004770_060 Hb_030885_020--Hb_004770_060 Hb_005597_010 Hb_005597_010 Hb_030885_020--Hb_005597_010 Hb_060585_010 Hb_060585_010 Hb_030885_020--Hb_060585_010 Hb_020532_010 Hb_020532_010 Hb_030885_020--Hb_020532_010 Hb_002108_020 Hb_002108_020 Hb_012539_090--Hb_002108_020 Hb_004907_040 Hb_004907_040 Hb_012539_090--Hb_004907_040 Hb_000134_100 Hb_000134_100 Hb_012539_090--Hb_000134_100 Hb_000743_070 Hb_000743_070 Hb_000737_020--Hb_000743_070 Hb_000127_050 Hb_000127_050 Hb_000737_020--Hb_000127_050 Hb_160814_010 Hb_160814_010 Hb_000737_020--Hb_160814_010 Hb_004785_150 Hb_004785_150 Hb_000737_020--Hb_004785_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0136344 0.0261982 0 0.0152017
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0124441 0

CAGE analysis