Hb_003551_050

Information

Type -
Description -
Location Contig3551: 95642-99881
Sequence    

Annotation

kegg
ID tcc:TCM_024386
description Tetratricopeptide repeat (TPR)-like superfamily protein
nr
ID XP_012085991.1
description PREDICTED: mitochondrial fission 1 protein A [Jatropha curcas]
swissprot
ID Q9M1J1
description Mitochondrial fission 1 protein A OS=Arabidopsis thaliana GN=FIS1A PE=1 SV=1
trembl
ID A0A067K1X4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22481 PE=4 SV=1
Gene Ontology
ID GO:0000266
description mitochondrial fission 1 protein a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36788: 98427-98794 , PASA_asmbl_36789: 95647-97014 , PASA_asmbl_36791: 98094-98368 , PASA_asmbl_36792: 95827-99844
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003551_050 0.0 - - PREDICTED: mitochondrial fission 1 protein A [Jatropha curcas]
2 Hb_093458_050 0.0772162489 - - glutathione reductase [Hevea brasiliensis]
3 Hb_011953_020 0.0825656128 - - PREDICTED: ORM1-like protein 1 [Jatropha curcas]
4 Hb_000976_360 0.0997513435 - - PREDICTED: uncharacterized protein LOC105646237 [Jatropha curcas]
5 Hb_031862_110 0.1005868492 - - calcium-dependent protein kinase [Hevea brasiliensis]
6 Hb_002603_160 0.1012012453 - - Arginyl-tRNA--protein transferase, putative [Ricinus communis]
7 Hb_000753_130 0.1016377922 - - PREDICTED: uncharacterized protein LOC105640673 [Jatropha curcas]
8 Hb_003581_260 0.1081950589 - - PREDICTED: vacuolar protein sorting-associated protein 29-like [Jatropha curcas]
9 Hb_005614_050 0.1095546185 - - PREDICTED: aspartate aminotransferase, mitochondrial-like [Jatropha curcas]
10 Hb_006472_050 0.1097051387 - - PREDICTED: ubiquitin-conjugating enzyme E2 7 isoform X2 [Elaeis guineensis]
11 Hb_002056_060 0.1110035462 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
12 Hb_002290_040 0.1127995852 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002005_020 0.1128866947 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001159_080 0.1135870726 - - hypothetical protein JCGZ_20745 [Jatropha curcas]
15 Hb_002756_020 0.1137990818 transcription factor TF Family: HB bel1 homeotic protein, putative [Ricinus communis]
16 Hb_000431_010 0.1146733858 - - hypothetical protein POPTR_0016s05340g [Populus trichocarpa]
17 Hb_027402_070 0.1151735861 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
18 Hb_007161_010 0.1152325786 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105630404 isoform X1 [Jatropha curcas]
19 Hb_002301_230 0.1156734973 - - hypothetical protein JCGZ_21466 [Jatropha curcas]
20 Hb_000061_300 0.1165786962 - - hypothetical protein JCGZ_11668 [Jatropha curcas]

Gene co-expression network

sample Hb_003551_050 Hb_003551_050 Hb_093458_050 Hb_093458_050 Hb_003551_050--Hb_093458_050 Hb_011953_020 Hb_011953_020 Hb_003551_050--Hb_011953_020 Hb_000976_360 Hb_000976_360 Hb_003551_050--Hb_000976_360 Hb_031862_110 Hb_031862_110 Hb_003551_050--Hb_031862_110 Hb_002603_160 Hb_002603_160 Hb_003551_050--Hb_002603_160 Hb_000753_130 Hb_000753_130 Hb_003551_050--Hb_000753_130 Hb_093458_050--Hb_011953_020 Hb_000922_390 Hb_000922_390 Hb_093458_050--Hb_000922_390 Hb_002600_040 Hb_002600_040 Hb_093458_050--Hb_002600_040 Hb_001519_030 Hb_001519_030 Hb_093458_050--Hb_001519_030 Hb_002239_060 Hb_002239_060 Hb_093458_050--Hb_002239_060 Hb_002005_020 Hb_002005_020 Hb_011953_020--Hb_002005_020 Hb_029866_020 Hb_029866_020 Hb_011953_020--Hb_029866_020 Hb_001519_050 Hb_001519_050 Hb_011953_020--Hb_001519_050 Hb_011953_020--Hb_001519_030 Hb_001141_280 Hb_001141_280 Hb_000976_360--Hb_001141_280 Hb_000046_290 Hb_000046_290 Hb_000976_360--Hb_000046_290 Hb_027402_070 Hb_027402_070 Hb_000976_360--Hb_027402_070 Hb_000963_180 Hb_000963_180 Hb_000976_360--Hb_000963_180 Hb_000224_120 Hb_000224_120 Hb_000976_360--Hb_000224_120 Hb_000431_010 Hb_000431_010 Hb_031862_110--Hb_000431_010 Hb_000240_090 Hb_000240_090 Hb_031862_110--Hb_000240_090 Hb_001014_040 Hb_001014_040 Hb_031862_110--Hb_001014_040 Hb_006711_060 Hb_006711_060 Hb_031862_110--Hb_006711_060 Hb_000617_150 Hb_000617_150 Hb_031862_110--Hb_000617_150 Hb_002056_060 Hb_002056_060 Hb_031862_110--Hb_002056_060 Hb_131864_040 Hb_131864_040 Hb_002603_160--Hb_131864_040 Hb_003018_190 Hb_003018_190 Hb_002603_160--Hb_003018_190 Hb_006846_110 Hb_006846_110 Hb_002603_160--Hb_006846_110 Hb_005188_090 Hb_005188_090 Hb_002603_160--Hb_005188_090 Hb_000223_150 Hb_000223_150 Hb_002603_160--Hb_000223_150 Hb_002603_160--Hb_001141_280 Hb_003408_030 Hb_003408_030 Hb_000753_130--Hb_003408_030 Hb_000753_130--Hb_027402_070 Hb_002527_070 Hb_002527_070 Hb_000753_130--Hb_002527_070 Hb_008289_060 Hb_008289_060 Hb_000753_130--Hb_008289_060 Hb_000753_130--Hb_000431_010 Hb_000753_130--Hb_001141_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.4892 5.17527 3.79345 12.8167 13.5509 15.3523
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.1025 31.0028 56.6163 16.057 6.78176

CAGE analysis