Hb_003556_020

Information

Type -
Description -
Location Contig3556: 14154-14498
Sequence    

Annotation

kegg
ID cit:102626945
description non-specific lipid-transfer protein D, cotyledon-specific isoform-like
nr
ID XP_006468370.1
description PREDICTED: non-specific lipid-transfer protein D, cotyledon-specific isoform-like [Citrus sinensis]
swissprot
ID P10975
description Non-specific lipid-transfer protein C, cotyledon-specific isoform OS=Ricinus communis PE=1 SV=2
trembl
ID A0A067GFY8
description Non-specific lipid-transfer protein (Fragment) OS=Citrus sinensis GN=CISIN_1g045117mg PE=3 SV=1
Gene Ontology
ID GO:0008289
description non-specific lipid-transfer protein cotyledon-specific isoform-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36796: 14095-14923
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003556_020 0.0 - - PREDICTED: non-specific lipid-transfer protein D, cotyledon-specific isoform-like [Citrus sinensis]
2 Hb_002463_080 0.0032428972 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_000574_020 0.0110073422 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_006275_030 0.0140727248 - - -
5 Hb_012194_010 0.0362562684 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
6 Hb_010222_010 0.0476044016 - - -
7 Hb_005741_010 0.0488449802 - - PREDICTED: uncharacterized protein LOC105775353 [Gossypium raimondii]
8 Hb_000188_090 0.0508872746 - - JHL22C18.10 [Jatropha curcas]
9 Hb_004458_050 0.0535860893 - - -
10 Hb_000934_220 0.0566240585 - - PREDICTED: uncharacterized protein LOC104890722 [Beta vulgaris subsp. vulgaris]
11 Hb_011360_100 0.0675561511 - - -
12 Hb_001887_030 0.0765458518 - - -
13 Hb_044767_010 0.0795768526 - - -
14 Hb_066620_010 0.0824472925 - - hypothetical protein JCGZ_08269 [Jatropha curcas]
15 Hb_059069_010 0.0842252351 - - PREDICTED: uncharacterized protein LOC105180180, partial [Sesamum indicum]
16 Hb_038675_010 0.0853426974 - - PREDICTED: uncharacterized protein LOC105155307, partial [Sesamum indicum]
17 Hb_012587_010 0.0901188794 - - -
18 Hb_003985_020 0.0940572732 - - -
19 Hb_003017_010 0.0967589177 - - PREDICTED: uncharacterized protein LOC104878882 [Vitis vinifera]
20 Hb_002257_070 0.0977323495 - - hypothetical protein, partial [Pseudomonas fluorescens]

Gene co-expression network

sample Hb_003556_020 Hb_003556_020 Hb_002463_080 Hb_002463_080 Hb_003556_020--Hb_002463_080 Hb_000574_020 Hb_000574_020 Hb_003556_020--Hb_000574_020 Hb_006275_030 Hb_006275_030 Hb_003556_020--Hb_006275_030 Hb_012194_010 Hb_012194_010 Hb_003556_020--Hb_012194_010 Hb_010222_010 Hb_010222_010 Hb_003556_020--Hb_010222_010 Hb_005741_010 Hb_005741_010 Hb_003556_020--Hb_005741_010 Hb_002463_080--Hb_000574_020 Hb_002463_080--Hb_006275_030 Hb_002463_080--Hb_012194_010 Hb_002463_080--Hb_005741_010 Hb_004458_050 Hb_004458_050 Hb_002463_080--Hb_004458_050 Hb_000574_020--Hb_006275_030 Hb_000574_020--Hb_012194_010 Hb_000574_020--Hb_005741_010 Hb_000574_020--Hb_004458_050 Hb_006275_030--Hb_012194_010 Hb_006275_030--Hb_005741_010 Hb_006275_030--Hb_004458_050 Hb_012194_010--Hb_005741_010 Hb_012194_010--Hb_004458_050 Hb_011360_100 Hb_011360_100 Hb_012194_010--Hb_011360_100 Hb_000188_090 Hb_000188_090 Hb_010222_010--Hb_000188_090 Hb_000934_220 Hb_000934_220 Hb_010222_010--Hb_000934_220 Hb_001887_030 Hb_001887_030 Hb_010222_010--Hb_001887_030 Hb_044767_010 Hb_044767_010 Hb_010222_010--Hb_044767_010 Hb_066620_010 Hb_066620_010 Hb_010222_010--Hb_066620_010 Hb_012587_010 Hb_012587_010 Hb_010222_010--Hb_012587_010 Hb_005741_010--Hb_004458_050 Hb_005741_010--Hb_011360_100 Hb_059069_010 Hb_059069_010 Hb_005741_010--Hb_059069_010 Hb_038675_010 Hb_038675_010 Hb_005741_010--Hb_038675_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.150578 0 0 0 0 0.209411
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis