Hb_003556_060

Information

Type -
Description -
Location Contig3556: 50729-55843
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003556_060 0.0 - - -
2 Hb_126077_020 0.0737141308 - - Kinase family protein with leucine-rich repeat domain [Theobroma cacao]
3 Hb_034342_010 0.0792767355 - - conserved hypothetical protein [Ricinus communis]
4 Hb_022998_010 0.1017467434 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_001424_080 0.1085930344 - - PREDICTED: probable L-type lectin-domain containing receptor kinase S.5 [Jatropha curcas]
6 Hb_017866_020 0.1163050152 transcription factor TF Family: WRKY WRKY transcription factor 40 [Jatropha curcas]
7 Hb_000077_460 0.1174885138 - - -
8 Hb_001283_010 0.1222986884 transcription factor TF Family: LOB LOB domain-containing protein 15 [Populus tremula x Populus tremuloides]
9 Hb_000045_180 0.1227866859 - - aquaporin PIP1 [Hevea brasiliensis]
10 Hb_002003_020 0.1315773748 - - PREDICTED: UDP-glycosyltransferase 74F1-like [Jatropha curcas]
11 Hb_013914_020 0.134759491 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
12 Hb_002716_080 0.1362293635 - - PREDICTED: uncharacterized protein At4g00950 [Jatropha curcas]
13 Hb_003938_010 0.1370363747 transcription factor TF Family: ERF Ethylene-responsive transcription factor 1B, putative [Ricinus communis]
14 Hb_001663_100 0.1379854199 - - -
15 Hb_000935_070 0.1409031222 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
16 Hb_000365_290 0.1446853825 - - PREDICTED: protein MTL1-like isoform X1 [Jatropha curcas]
17 Hb_002236_070 0.1486621647 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH36-like [Jatropha curcas]
18 Hb_001227_020 0.1490699755 - - -
19 Hb_000407_080 0.1510264689 - - 1-aminocyclopropane-1-carboxylate oxidase [Hevea brasiliensis]
20 Hb_004136_050 0.1551560938 - - -

Gene co-expression network

sample Hb_003556_060 Hb_003556_060 Hb_126077_020 Hb_126077_020 Hb_003556_060--Hb_126077_020 Hb_034342_010 Hb_034342_010 Hb_003556_060--Hb_034342_010 Hb_022998_010 Hb_022998_010 Hb_003556_060--Hb_022998_010 Hb_001424_080 Hb_001424_080 Hb_003556_060--Hb_001424_080 Hb_017866_020 Hb_017866_020 Hb_003556_060--Hb_017866_020 Hb_000077_460 Hb_000077_460 Hb_003556_060--Hb_000077_460 Hb_126077_020--Hb_034342_010 Hb_126077_020--Hb_022998_010 Hb_126077_020--Hb_001424_080 Hb_001663_100 Hb_001663_100 Hb_126077_020--Hb_001663_100 Hb_186298_010 Hb_186298_010 Hb_126077_020--Hb_186298_010 Hb_034342_010--Hb_001424_080 Hb_034342_010--Hb_001663_100 Hb_034342_010--Hb_022998_010 Hb_000692_180 Hb_000692_180 Hb_034342_010--Hb_000692_180 Hb_022998_010--Hb_001663_100 Hb_007432_050 Hb_007432_050 Hb_022998_010--Hb_007432_050 Hb_000649_030 Hb_000649_030 Hb_022998_010--Hb_000649_030 Hb_001424_080--Hb_001663_100 Hb_001424_080--Hb_000692_180 Hb_002400_250 Hb_002400_250 Hb_001424_080--Hb_002400_250 Hb_017866_020--Hb_000077_460 Hb_002003_020 Hb_002003_020 Hb_017866_020--Hb_002003_020 Hb_013914_020 Hb_013914_020 Hb_017866_020--Hb_013914_020 Hb_000045_180 Hb_000045_180 Hb_017866_020--Hb_000045_180 Hb_002007_140 Hb_002007_140 Hb_017866_020--Hb_002007_140 Hb_001283_010 Hb_001283_010 Hb_017866_020--Hb_001283_010 Hb_028207_030 Hb_028207_030 Hb_000077_460--Hb_028207_030 Hb_000077_460--Hb_000045_180 Hb_000077_460--Hb_001283_010 Hb_000077_460--Hb_013914_020 Hb_000077_460--Hb_002003_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.367212 0.0474363 0.141261 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.353111 0

CAGE analysis