Hb_003561_020

Information

Type -
Description -
Location Contig3561: 13017-14781
Sequence    

Annotation

kegg
ID rcu:RCOM_0504580
description gulonolactone oxidase, putative (EC:1.5.99.12)
nr
ID XP_002534458.1
description gulonolactone oxidase, putative [Ricinus communis]
swissprot
ID O22213
description Cytokinin dehydrogenase 1 OS=Arabidopsis thaliana GN=CKX1 PE=1 SV=1
trembl
ID B9T889
description Gulonolactone oxidase, putative OS=Ricinus communis GN=RCOM_0504580 PE=4 SV=1
Gene Ontology
ID GO:0008762
description cytokinin dehydrogenase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36809: 12618-13594 , PASA_asmbl_36810: 13628-14761
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003561_020 0.0 - - gulonolactone oxidase, putative [Ricinus communis]
2 Hb_007290_010 0.0475160972 - - cytochrome P450, putative [Ricinus communis]
3 Hb_004137_090 0.0493020617 - - PREDICTED: tumor necrosis factor ligand superfamily member 6 [Populus euphratica]
4 Hb_010080_040 0.0751972496 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003540_010 0.0801687927 - - -
6 Hb_003216_010 0.0811344339 - - glycosyl hydrolase family protein [Populus trichocarpa]
7 Hb_000917_220 0.0883308208 - - clavata3/esr-related 12 family protein [Populus trichocarpa]
8 Hb_178968_010 0.0888037298 - - hypothetical protein JCGZ_15830 [Jatropha curcas]
9 Hb_174829_030 0.0913969041 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005057_020 0.0952319897 - - PREDICTED: uncharacterized protein LOC105631610 [Jatropha curcas]
11 Hb_000696_120 0.0965172659 - - PREDICTED: protein FD [Populus euphratica]
12 Hb_069384_010 0.0979920873 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA27-like isoform X1 [Jatropha curcas]
13 Hb_000053_150 0.1005130716 - - clavata3/esr-related 12 family protein [Populus trichocarpa]
14 Hb_010608_040 0.1034889131 - - PREDICTED: aluminum-activated malate transporter 9-like [Jatropha curcas]
15 Hb_004102_180 0.1049652858 - - zinc finger family protein [Populus trichocarpa]
16 Hb_018671_010 0.1098932114 - - -
17 Hb_000230_220 0.11012929 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002186_120 0.1134556463 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X5 [Populus euphratica]
19 Hb_122079_010 0.1138190907 - - PREDICTED: uncharacterized protein LOC105127729 [Populus euphratica]
20 Hb_000224_050 0.1152016332 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003561_020 Hb_003561_020 Hb_007290_010 Hb_007290_010 Hb_003561_020--Hb_007290_010 Hb_004137_090 Hb_004137_090 Hb_003561_020--Hb_004137_090 Hb_010080_040 Hb_010080_040 Hb_003561_020--Hb_010080_040 Hb_003540_010 Hb_003540_010 Hb_003561_020--Hb_003540_010 Hb_003216_010 Hb_003216_010 Hb_003561_020--Hb_003216_010 Hb_000917_220 Hb_000917_220 Hb_003561_020--Hb_000917_220 Hb_007290_010--Hb_004137_090 Hb_004102_180 Hb_004102_180 Hb_007290_010--Hb_004102_180 Hb_069384_010 Hb_069384_010 Hb_007290_010--Hb_069384_010 Hb_010608_040 Hb_010608_040 Hb_007290_010--Hb_010608_040 Hb_011218_010 Hb_011218_010 Hb_007290_010--Hb_011218_010 Hb_178968_010 Hb_178968_010 Hb_004137_090--Hb_178968_010 Hb_004137_090--Hb_003540_010 Hb_004137_090--Hb_003216_010 Hb_000053_150 Hb_000053_150 Hb_004137_090--Hb_000053_150 Hb_000696_120 Hb_000696_120 Hb_010080_040--Hb_000696_120 Hb_174829_030 Hb_174829_030 Hb_010080_040--Hb_174829_030 Hb_001006_080 Hb_001006_080 Hb_010080_040--Hb_001006_080 Hb_010080_040--Hb_003216_010 Hb_005057_020 Hb_005057_020 Hb_010080_040--Hb_005057_020 Hb_003540_010--Hb_000917_220 Hb_003540_010--Hb_003216_010 Hb_003540_010--Hb_178968_010 Hb_003540_010--Hb_174829_030 Hb_003540_010--Hb_000053_150 Hb_003216_010--Hb_005057_020 Hb_003216_010--Hb_000696_120 Hb_003216_010--Hb_174829_030 Hb_003216_010--Hb_178968_010 Hb_003216_010--Hb_000917_220 Hb_000917_220--Hb_174829_030 Hb_000917_220--Hb_178968_010 Hb_151027_010 Hb_151027_010 Hb_000917_220--Hb_151027_010 Hb_000917_220--Hb_004137_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.743245 1.52077 9.40643 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.144441

CAGE analysis