Hb_003567_030

Information

Type -
Description -
Location Contig3567: 65436-75336
Sequence    

Annotation

kegg
ID rcu:RCOM_1086350
description HIRA-interacting protein, putative
nr
ID XP_012081293.1
description PREDICTED: nifU-like protein 4, mitochondrial [Jatropha curcas]
swissprot
ID Q9LIG6
description NifU-like protein 4, mitochondrial OS=Arabidopsis thaliana GN=NIFU4 PE=2 SV=1
trembl
ID A0A067KCW2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18623 PE=4 SV=1
Gene Ontology
ID GO:0005506
description nifu-like protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36825: 54104-75449
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003567_030 0.0 - - PREDICTED: nifU-like protein 4, mitochondrial [Jatropha curcas]
2 Hb_002105_100 0.0998747429 - - protein with unknown function [Ricinus communis]
3 Hb_171900_060 0.1058178698 - - PREDICTED: uncharacterized protein LOC105643368 [Jatropha curcas]
4 Hb_002298_030 0.1101699534 - - PREDICTED: coenzyme Q-binding protein COQ10 homolog, mitochondrial [Jatropha curcas]
5 Hb_000025_630 0.1124468606 - - PREDICTED: uncharacterized protein LOC105635952 [Jatropha curcas]
6 Hb_000510_300 0.1171410085 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Jatropha curcas]
7 Hb_012796_020 0.1177702388 - - PREDICTED: ADP-ribosylation factor 1 [Prunus mume]
8 Hb_187679_010 0.1195209608 - - -
9 Hb_002631_280 0.119602247 - - PREDICTED: ubiquitin isoform X2 [Eucalyptus grandis]
10 Hb_154948_040 0.1199239742 - - hypothetical protein B456_013G043800 [Gossypium raimondii]
11 Hb_005054_080 0.1209580183 transcription factor TF Family: LIM Pollen-specific protein SF3, putative [Ricinus communis]
12 Hb_001221_220 0.1212099442 - - PREDICTED: deoxycytidylate deaminase isoform X1 [Jatropha curcas]
13 Hb_000849_130 0.122540875 - - PREDICTED: adrenodoxin-like protein, mitochondrial [Nelumbo nucifera]
14 Hb_004032_030 0.1233172549 - - PREDICTED: RNA-binding protein 24-like isoform X1 [Populus euphratica]
15 Hb_005695_120 0.1237218144 - - Pollen-specific protein C13 precursor, putative [Ricinus communis]
16 Hb_000608_050 0.1244036238 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]
17 Hb_000453_160 0.125094471 - - vacuolar protein sorting 26, vps26, putative [Ricinus communis]
18 Hb_004230_020 0.1259127406 - - PREDICTED: uncharacterized protein LOC105648105 [Jatropha curcas]
19 Hb_156635_010 0.126414118 - - PREDICTED: autophagy-related protein 8f [Jatropha curcas]
20 Hb_001699_100 0.1281341722 - - PREDICTED: calmodulin-lysine N-methyltransferase [Jatropha curcas]

Gene co-expression network

sample Hb_003567_030 Hb_003567_030 Hb_002105_100 Hb_002105_100 Hb_003567_030--Hb_002105_100 Hb_171900_060 Hb_171900_060 Hb_003567_030--Hb_171900_060 Hb_002298_030 Hb_002298_030 Hb_003567_030--Hb_002298_030 Hb_000025_630 Hb_000025_630 Hb_003567_030--Hb_000025_630 Hb_000510_300 Hb_000510_300 Hb_003567_030--Hb_000510_300 Hb_012796_020 Hb_012796_020 Hb_003567_030--Hb_012796_020 Hb_000002_380 Hb_000002_380 Hb_002105_100--Hb_000002_380 Hb_154948_040 Hb_154948_040 Hb_002105_100--Hb_154948_040 Hb_000005_090 Hb_000005_090 Hb_002105_100--Hb_000005_090 Hb_000805_240 Hb_000805_240 Hb_002105_100--Hb_000805_240 Hb_000390_300 Hb_000390_300 Hb_002105_100--Hb_000390_300 Hb_002171_060 Hb_002171_060 Hb_002105_100--Hb_002171_060 Hb_171900_060--Hb_002105_100 Hb_001234_070 Hb_001234_070 Hb_171900_060--Hb_001234_070 Hb_021068_040 Hb_021068_040 Hb_171900_060--Hb_021068_040 Hb_000359_150 Hb_000359_150 Hb_171900_060--Hb_000359_150 Hb_006846_130 Hb_006846_130 Hb_171900_060--Hb_006846_130 Hb_006618_120 Hb_006618_120 Hb_002298_030--Hb_006618_120 Hb_004032_030 Hb_004032_030 Hb_002298_030--Hb_004032_030 Hb_005054_080 Hb_005054_080 Hb_002298_030--Hb_005054_080 Hb_005695_120 Hb_005695_120 Hb_002298_030--Hb_005695_120 Hb_002298_030--Hb_154948_040 Hb_000300_630 Hb_000300_630 Hb_002298_030--Hb_000300_630 Hb_172632_120 Hb_172632_120 Hb_000025_630--Hb_172632_120 Hb_012322_020 Hb_012322_020 Hb_000025_630--Hb_012322_020 Hb_000025_180 Hb_000025_180 Hb_000025_630--Hb_000025_180 Hb_002235_210 Hb_002235_210 Hb_000025_630--Hb_002235_210 Hb_001699_100 Hb_001699_100 Hb_000025_630--Hb_001699_100 Hb_007441_190 Hb_007441_190 Hb_000025_630--Hb_007441_190 Hb_000783_010 Hb_000783_010 Hb_000510_300--Hb_000783_010 Hb_001703_060 Hb_001703_060 Hb_000510_300--Hb_001703_060 Hb_001427_160 Hb_001427_160 Hb_000510_300--Hb_001427_160 Hb_168978_010 Hb_168978_010 Hb_000510_300--Hb_168978_010 Hb_000720_040 Hb_000720_040 Hb_000510_300--Hb_000720_040 Hb_001366_370 Hb_001366_370 Hb_000510_300--Hb_001366_370 Hb_030736_020 Hb_030736_020 Hb_012796_020--Hb_030736_020 Hb_002053_140 Hb_002053_140 Hb_012796_020--Hb_002053_140 Hb_012796_020--Hb_001699_100 Hb_012796_020--Hb_006618_120 Hb_003929_270 Hb_003929_270 Hb_012796_020--Hb_003929_270 Hb_001124_020 Hb_001124_020 Hb_012796_020--Hb_001124_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
58.3021 42.6621 63.0587 138.762 42.3739 50.3132
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
67.7604 102.432 59.9238 29.5845 17.6202

CAGE analysis