Hb_003579_010

Information

Type -
Description -
Location Contig3579: 27465-32777
Sequence    

Annotation

kegg
ID pop:POPTR_0005s17100g
description POPTRDRAFT_559103; cryptochrome 1 family protein
nr
ID AEK26572.1
description cryptochrome 1.2 [Populus tremula]
swissprot
ID Q43125
description Cryptochrome-1 OS=Arabidopsis thaliana GN=CRY1 PE=1 SV=2
trembl
ID G1FMC8
description Cryptochrome 1.2 OS=Populus tremula GN=CRY1.2 PE=4 SV=1
Gene Ontology
ID GO:0005829
description cryptochrome 1 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36857: 27521-32616 , PASA_asmbl_36859: 29935-30185
cDNA
(Sanger)
(ID:Location)		 030_J09.ab1: 27521-27895

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003579_010 0.0 - - cryptochrome 1.2 [Populus tremula]
2 Hb_000140_220 0.090660804 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 22 [Jatropha curcas]
3 Hb_003073_040 0.1262174627 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF3.6-like isoform X2 [Populus euphratica]
4 Hb_132259_010 0.1262667419 - - PREDICTED: WAT1-related protein At5g64700 [Jatropha curcas]
5 Hb_000015_230 0.1304427706 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF3.6-like isoform X2 [Populus euphratica]
6 Hb_115114_010 0.1348018423 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000049_290 0.1432028548 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
8 Hb_009557_080 0.1436676637 - - PREDICTED: glutaredoxin-C9-like [Populus euphratica]
9 Hb_010180_050 0.1444593661 - - PREDICTED: CBL-interacting protein kinase 2 [Jatropha curcas]
10 Hb_000032_590 0.1512623706 - - PREDICTED: glutaredoxin domain-containing cysteine-rich protein 1 [Jatropha curcas]
11 Hb_002010_080 0.1566631277 - - PREDICTED: probable receptor-like protein kinase At1g11050 [Jatropha curcas]
12 Hb_006358_030 0.1572259842 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
13 Hb_004879_030 0.157777619 - - PREDICTED: uncharacterized protein LOC105124685 [Populus euphratica]
14 Hb_006717_010 0.1605452142 - - PREDICTED: uncharacterized protein LOC105649338 [Jatropha curcas]
15 Hb_001147_030 0.1626709214 - - hypothetical protein JCGZ_14809 [Jatropha curcas]
16 Hb_011457_080 0.1636953484 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
17 Hb_003106_240 0.166085963 - - hypothetical protein POPTR_0012s07880g [Populus trichocarpa]
18 Hb_170401_010 0.1668107483 - - receptor serine/threonine kinase, putative [Ricinus communis]
19 Hb_010055_020 0.1675179052 - - PREDICTED: receptor-like protein kinase [Jatropha curcas]
20 Hb_000363_050 0.16773073 - - PREDICTED: zinc finger CCCH domain-containing protein 18-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_003579_010 Hb_003579_010 Hb_000140_220 Hb_000140_220 Hb_003579_010--Hb_000140_220 Hb_003073_040 Hb_003073_040 Hb_003579_010--Hb_003073_040 Hb_132259_010 Hb_132259_010 Hb_003579_010--Hb_132259_010 Hb_000015_230 Hb_000015_230 Hb_003579_010--Hb_000015_230 Hb_115114_010 Hb_115114_010 Hb_003579_010--Hb_115114_010 Hb_000049_290 Hb_000049_290 Hb_003579_010--Hb_000049_290 Hb_000140_220--Hb_115114_010 Hb_000140_220--Hb_003073_040 Hb_009557_080 Hb_009557_080 Hb_000140_220--Hb_009557_080 Hb_000140_220--Hb_000049_290 Hb_004324_220 Hb_004324_220 Hb_000140_220--Hb_004324_220 Hb_003073_040--Hb_132259_010 Hb_003073_040--Hb_000015_230 Hb_003073_040--Hb_115114_010 Hb_000270_250 Hb_000270_250 Hb_003073_040--Hb_000270_250 Hb_002030_100 Hb_002030_100 Hb_003073_040--Hb_002030_100 Hb_132259_010--Hb_115114_010 Hb_132259_010--Hb_000015_230 Hb_004879_030 Hb_004879_030 Hb_132259_010--Hb_004879_030 Hb_132259_010--Hb_000140_220 Hb_000032_590 Hb_000032_590 Hb_132259_010--Hb_000032_590 Hb_000015_230--Hb_115114_010 Hb_000325_070 Hb_000325_070 Hb_000015_230--Hb_000325_070 Hb_000813_090 Hb_000813_090 Hb_000015_230--Hb_000813_090 Hb_000015_230--Hb_000140_220 Hb_001046_040 Hb_001046_040 Hb_115114_010--Hb_001046_040 Hb_115114_010--Hb_004879_030 Hb_044624_010 Hb_044624_010 Hb_115114_010--Hb_044624_010 Hb_115114_010--Hb_000813_090 Hb_022487_010 Hb_022487_010 Hb_000049_290--Hb_022487_010 Hb_000049_290--Hb_004324_220 Hb_000363_050 Hb_000363_050 Hb_000049_290--Hb_000363_050 Hb_064293_010 Hb_064293_010 Hb_000049_290--Hb_064293_010 Hb_000331_220 Hb_000331_220 Hb_000049_290--Hb_000331_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.08317 109.451 52.3357 53.1608 1.9289 0.271937
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.158513 0.0374205 0.0714781 3.45994 94.6991

CAGE analysis