Hb_003580_040

Information

Type -
Description -
Location Contig3580: 48004-61957
Sequence    

Annotation

kegg
ID tcc:TCM_002245
description Enhanced downy mildew 2, putative isoform 1
nr
ID XP_012080689.1
description PREDICTED: protein ENHANCED DOWNY MILDEW 2-like [Jatropha curcas]
swissprot
ID F4K3G5
description Protein ENHANCED DOWNY MILDEW 2 OS=Arabidopsis thaliana GN=EDM2 PE=1 SV=1
trembl
ID A0A067K762
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13791 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36918: 48009-48728 , PASA_asmbl_36919: 49356-53870 , PASA_asmbl_36920: 49641-49892 , PASA_asmbl_36921: 50458-51105 , PASA_asmbl_36922: 54372-54583 , PASA_asmbl_36923: 55241-61652 , PASA_asmbl_36924: 59416-59948
cDNA
(Sanger)
(ID:Location)		 007_B02.ab1: 48009-48728 , 038_A01.ab1: 48009-48728

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003580_040 0.0 - - PREDICTED: protein ENHANCED DOWNY MILDEW 2-like [Jatropha curcas]
2 Hb_007757_100 0.0821433562 - - PREDICTED: ER membrane protein complex subunit 3-like [Jatropha curcas]
3 Hb_000181_310 0.0861311843 - - hypothetical protein JCGZ_20998 [Jatropha curcas]
4 Hb_003666_050 0.0983044059 - - PREDICTED: NASP-related protein sim3 [Jatropha curcas]
5 Hb_000608_340 0.1129376634 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Populus euphratica]
6 Hb_019871_020 0.1169769938 - - PREDICTED: uncharacterized protein LOC105642047 [Jatropha curcas]
7 Hb_001195_030 0.120261062 - - auxilin, putative [Ricinus communis]
8 Hb_003673_020 0.1247735475 - - hypothetical protein JCGZ_20998 [Jatropha curcas]
9 Hb_007668_020 0.1262948799 - - PREDICTED: uncharacterized protein LOC105631102 [Jatropha curcas]
10 Hb_035360_010 0.126577773 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
11 Hb_061256_030 0.1280518801 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
12 Hb_000211_090 0.1282697892 - - hypothetical protein PHAVU_011G023400g, partial [Phaseolus vulgaris]
13 Hb_009913_050 0.1287173073 - - PREDICTED: partner of Y14 and mago-like [Jatropha curcas]
14 Hb_000173_210 0.1301384242 - - PREDICTED: serine incorporator 3 [Jatropha curcas]
15 Hb_000940_040 0.1301771027 - - PREDICTED: protein XAP5 CIRCADIAN TIMEKEEPER isoform X1 [Jatropha curcas]
16 Hb_007534_040 0.1306747726 - - PREDICTED: uncharacterized protein LOC105635538 [Jatropha curcas]
17 Hb_010189_010 0.1318740246 - - -
18 Hb_004531_090 0.134219381 - - PREDICTED: VHS domain-containing protein At3g16270 [Jatropha curcas]
19 Hb_000134_360 0.1344861302 - - PREDICTED: protein gar2 [Jatropha curcas]
20 Hb_000540_140 0.1349358354 - - zinc binding dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003580_040 Hb_003580_040 Hb_007757_100 Hb_007757_100 Hb_003580_040--Hb_007757_100 Hb_000181_310 Hb_000181_310 Hb_003580_040--Hb_000181_310 Hb_003666_050 Hb_003666_050 Hb_003580_040--Hb_003666_050 Hb_000608_340 Hb_000608_340 Hb_003580_040--Hb_000608_340 Hb_019871_020 Hb_019871_020 Hb_003580_040--Hb_019871_020 Hb_001195_030 Hb_001195_030 Hb_003580_040--Hb_001195_030 Hb_007757_100--Hb_000181_310 Hb_001279_330 Hb_001279_330 Hb_007757_100--Hb_001279_330 Hb_007668_020 Hb_007668_020 Hb_007757_100--Hb_007668_020 Hb_000199_080 Hb_000199_080 Hb_007757_100--Hb_000199_080 Hb_009913_050 Hb_009913_050 Hb_007757_100--Hb_009913_050 Hb_000181_310--Hb_003666_050 Hb_000540_140 Hb_000540_140 Hb_000181_310--Hb_000540_140 Hb_004143_070 Hb_004143_070 Hb_000181_310--Hb_004143_070 Hb_000181_310--Hb_009913_050 Hb_003666_050--Hb_001195_030 Hb_003666_050--Hb_000608_340 Hb_000211_090 Hb_000211_090 Hb_003666_050--Hb_000211_090 Hb_000185_090 Hb_000185_090 Hb_003666_050--Hb_000185_090 Hb_174865_050 Hb_174865_050 Hb_003666_050--Hb_174865_050 Hb_000779_040 Hb_000779_040 Hb_000608_340--Hb_000779_040 Hb_000608_340--Hb_019871_020 Hb_002374_150 Hb_002374_150 Hb_000608_340--Hb_002374_150 Hb_000619_070 Hb_000619_070 Hb_000608_340--Hb_000619_070 Hb_035360_010 Hb_035360_010 Hb_000608_340--Hb_035360_010 Hb_001582_030 Hb_001582_030 Hb_019871_020--Hb_001582_030 Hb_006173_020 Hb_006173_020 Hb_019871_020--Hb_006173_020 Hb_004531_090 Hb_004531_090 Hb_019871_020--Hb_004531_090 Hb_019871_020--Hb_000185_090 Hb_000940_040 Hb_000940_040 Hb_019871_020--Hb_000940_040 Hb_001195_030--Hb_000540_140 Hb_000684_180 Hb_000684_180 Hb_001195_030--Hb_000684_180 Hb_001195_030--Hb_174865_050 Hb_011644_020 Hb_011644_020 Hb_001195_030--Hb_011644_020 Hb_025557_020 Hb_025557_020 Hb_001195_030--Hb_025557_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.457 5.23944 6.6926 3.96445 36.9811 32.6674
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.2936 4.53496 3.04306 2.47971 4.89538

CAGE analysis