Hb_003580_050

Information

Type -
Description -
Location Contig3580: 63166-70033
Sequence    

Annotation

kegg
ID rcu:RCOM_0549790
description hypothetical protein
nr
ID XP_012080688.1
description PREDICTED: TBC1 domain family member 2B [Jatropha curcas]
swissprot
ID Q9BYX2
description TBC1 domain family member 2A OS=Homo sapiens GN=TBC1D2 PE=1 SV=3
trembl
ID A0A067K403
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13790 PE=4 SV=1
Gene Ontology
ID GO:0030048
description growth hormone-regulated tbc protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36926: 63159-70011
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003580_050 0.0 - - PREDICTED: TBC1 domain family member 2B [Jatropha curcas]
2 Hb_028008_040 0.0782080371 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000977_030 0.081798784 - - unnamed protein product [Vitis vinifera]
4 Hb_000996_030 0.0844286926 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g63430 isoform X1 [Jatropha curcas]
5 Hb_004696_010 0.0920299589 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At4g34500 [Jatropha curcas]
6 Hb_002724_010 0.0957444974 - - PREDICTED: nucleobase-ascorbate transporter 4-like [Citrus sinensis]
7 Hb_004218_200 0.1010286867 - - Ran GTPase binding protein, putative [Ricinus communis]
8 Hb_000212_410 0.1024805242 - - PREDICTED: serine carboxypeptidase 1-like [Jatropha curcas]
9 Hb_011918_070 0.1034661432 - - PREDICTED: probable inactive receptor kinase At1g48480 [Jatropha curcas]
10 Hb_000318_010 0.1061848056 - - calcium-dependent protein kinase 6 [Hevea brasiliensis]
11 Hb_001936_190 0.1073650117 - - hypothetical protein JCGZ_17780 [Jatropha curcas]
12 Hb_005730_110 0.1077192143 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
13 Hb_000290_030 0.1084768312 - - phosphoinositide 5-phosphatase, putative [Ricinus communis]
14 Hb_005725_240 0.1093429026 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH74 isoform X1 [Jatropha curcas]
15 Hb_000977_020 0.1108358599 - - beta-hexosaminidase, putative [Ricinus communis]
16 Hb_010222_040 0.1124915662 - - PREDICTED: kinesin-2 [Jatropha curcas]
17 Hb_070498_010 0.1136394558 - - receptor kinase, putative [Ricinus communis]
18 Hb_026240_020 0.1149103071 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At1g59780 [Jatropha curcas]
19 Hb_002078_390 0.1150077506 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 2 [Jatropha curcas]
20 Hb_001357_050 0.1158730461 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12-like [Jatropha curcas]

Gene co-expression network

sample Hb_003580_050 Hb_003580_050 Hb_028008_040 Hb_028008_040 Hb_003580_050--Hb_028008_040 Hb_000977_030 Hb_000977_030 Hb_003580_050--Hb_000977_030 Hb_000996_030 Hb_000996_030 Hb_003580_050--Hb_000996_030 Hb_004696_010 Hb_004696_010 Hb_003580_050--Hb_004696_010 Hb_002724_010 Hb_002724_010 Hb_003580_050--Hb_002724_010 Hb_004218_200 Hb_004218_200 Hb_003580_050--Hb_004218_200 Hb_002078_390 Hb_002078_390 Hb_028008_040--Hb_002078_390 Hb_028008_040--Hb_004696_010 Hb_001936_190 Hb_001936_190 Hb_028008_040--Hb_001936_190 Hb_012404_020 Hb_012404_020 Hb_028008_040--Hb_012404_020 Hb_005365_010 Hb_005365_010 Hb_028008_040--Hb_005365_010 Hb_026240_020 Hb_026240_020 Hb_000977_030--Hb_026240_020 Hb_000290_030 Hb_000290_030 Hb_000977_030--Hb_000290_030 Hb_000162_200 Hb_000162_200 Hb_000977_030--Hb_000162_200 Hb_005892_040 Hb_005892_040 Hb_000977_030--Hb_005892_040 Hb_000977_030--Hb_002724_010 Hb_011918_070 Hb_011918_070 Hb_000996_030--Hb_011918_070 Hb_070498_010 Hb_070498_010 Hb_000996_030--Hb_070498_010 Hb_168918_010 Hb_168918_010 Hb_000996_030--Hb_168918_010 Hb_000996_030--Hb_000977_030 Hb_000996_030--Hb_004696_010 Hb_004696_010--Hb_011918_070 Hb_003835_080 Hb_003835_080 Hb_004696_010--Hb_003835_080 Hb_001541_130 Hb_001541_130 Hb_004696_010--Hb_001541_130 Hb_001159_230 Hb_001159_230 Hb_004696_010--Hb_001159_230 Hb_000977_020 Hb_000977_020 Hb_002724_010--Hb_000977_020 Hb_000703_120 Hb_000703_120 Hb_002724_010--Hb_000703_120 Hb_000212_410 Hb_000212_410 Hb_002724_010--Hb_000212_410 Hb_000318_010 Hb_000318_010 Hb_002724_010--Hb_000318_010 Hb_000627_050 Hb_000627_050 Hb_002724_010--Hb_000627_050 Hb_002724_010--Hb_000290_030 Hb_000320_310 Hb_000320_310 Hb_004218_200--Hb_000320_310 Hb_001357_050 Hb_001357_050 Hb_004218_200--Hb_001357_050 Hb_001104_150 Hb_001104_150 Hb_004218_200--Hb_001104_150 Hb_004218_200--Hb_028008_040 Hb_005730_110 Hb_005730_110 Hb_004218_200--Hb_005730_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.496568 3.79587 17.1834 19.6281 0.0997144 0.499407
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.120268 0.0630891 0 4.41329 15.9135

CAGE analysis