Hb_003581_020

Information

Type -
Description -
Location Contig3581: 1934-4111
Sequence    

Annotation

kegg
ID rcu:RCOM_0698750
description protein with unknown function
nr
ID XP_012091959.1
description PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
swissprot
ID Q9VR91
description Probable E3 ubiquitin-protein ligase HERC2 OS=Drosophila melanogaster GN=HERC2 PE=1 SV=3
trembl
ID A0A067JES3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21709 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36927: 1169-2700 , PASA_asmbl_36928: 3643-4144
cDNA
(Sanger)
(ID:Location)		 030_K21.ab1: 3643-4144

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003581_020 0.0 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
2 Hb_007668_020 0.0751927918 - - PREDICTED: uncharacterized protein LOC105631102 [Jatropha curcas]
3 Hb_003716_020 0.0755421578 - - PREDICTED: putative vesicle-associated membrane protein 726 [Jatropha curcas]
4 Hb_083043_010 0.0823971603 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
5 Hb_007668_040 0.0848323903 - - PREDICTED: uncharacterized protein LOC103409082 [Malus domestica]
6 Hb_004881_050 0.0852694114 - - PREDICTED: obg-like ATPase 1 [Jatropha curcas]
7 Hb_000372_040 0.0891131094 - - WD-repeat protein, putative [Ricinus communis]
8 Hb_005000_270 0.0907405834 - - unnamed protein product [Vitis vinifera]
9 Hb_005000_100 0.0920827361 - - PCI domain-containing protein 2 [Morus notabilis]
10 Hb_012132_040 0.0938460011 - - PREDICTED: eukaryotic translation initiation factor 3 subunit H [Jatropha curcas]
11 Hb_002942_080 0.0946547502 - - PREDICTED: signal recognition particle subunit SRP68 [Jatropha curcas]
12 Hb_005129_050 0.0953649806 - - PREDICTED: probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase [Jatropha curcas]
13 Hb_024990_010 0.0972200547 - - PREDICTED: la protein 1 [Jatropha curcas]
14 Hb_002475_050 0.099080882 - - hypothetical protein JCGZ_22540 [Jatropha curcas]
15 Hb_079326_010 0.1008098616 - - PREDICTED: uncharacterized protein LOC105630719 isoform X1 [Jatropha curcas]
16 Hb_001341_050 0.1010998426 - - ATP synthase D chain, mitochondrial [Theobroma cacao]
17 Hb_000199_080 0.1012132089 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001582_030 0.1023390361 - - PREDICTED: uncharacterized protein LOC105639462 [Jatropha curcas]
19 Hb_000814_090 0.1041695611 - - conserved hypothetical protein [Ricinus communis]
20 Hb_005635_010 0.1042761571 - - PREDICTED: cleft lip and palate transmembrane protein 1 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_003581_020 Hb_003581_020 Hb_007668_020 Hb_007668_020 Hb_003581_020--Hb_007668_020 Hb_003716_020 Hb_003716_020 Hb_003581_020--Hb_003716_020 Hb_083043_010 Hb_083043_010 Hb_003581_020--Hb_083043_010 Hb_007668_040 Hb_007668_040 Hb_003581_020--Hb_007668_040 Hb_004881_050 Hb_004881_050 Hb_003581_020--Hb_004881_050 Hb_000372_040 Hb_000372_040 Hb_003581_020--Hb_000372_040 Hb_001278_060 Hb_001278_060 Hb_007668_020--Hb_001278_060 Hb_005129_050 Hb_005129_050 Hb_007668_020--Hb_005129_050 Hb_000213_070 Hb_000213_070 Hb_007668_020--Hb_000213_070 Hb_007668_020--Hb_003716_020 Hb_000199_080 Hb_000199_080 Hb_007668_020--Hb_000199_080 Hb_011497_010 Hb_011497_010 Hb_003716_020--Hb_011497_010 Hb_005000_270 Hb_005000_270 Hb_003716_020--Hb_005000_270 Hb_000849_100 Hb_000849_100 Hb_003716_020--Hb_000849_100 Hb_006002_030 Hb_006002_030 Hb_003716_020--Hb_006002_030 Hb_003711_040 Hb_003711_040 Hb_083043_010--Hb_003711_040 Hb_002811_120 Hb_002811_120 Hb_083043_010--Hb_002811_120 Hb_083043_010--Hb_004881_050 Hb_006114_020 Hb_006114_020 Hb_083043_010--Hb_006114_020 Hb_150204_010 Hb_150204_010 Hb_083043_010--Hb_150204_010 Hb_002942_080 Hb_002942_080 Hb_007668_040--Hb_002942_080 Hb_012132_040 Hb_012132_040 Hb_007668_040--Hb_012132_040 Hb_000364_060 Hb_000364_060 Hb_007668_040--Hb_000364_060 Hb_001341_050 Hb_001341_050 Hb_007668_040--Hb_001341_050 Hb_024990_010 Hb_024990_010 Hb_007668_040--Hb_024990_010 Hb_003006_060 Hb_003006_060 Hb_007668_040--Hb_003006_060 Hb_079326_010 Hb_079326_010 Hb_004881_050--Hb_079326_010 Hb_000457_060 Hb_000457_060 Hb_004881_050--Hb_000457_060 Hb_004881_050--Hb_000372_040 Hb_003434_060 Hb_003434_060 Hb_004881_050--Hb_003434_060 Hb_004881_050--Hb_002811_120 Hb_063047_010 Hb_063047_010 Hb_004881_050--Hb_063047_010 Hb_002475_050 Hb_002475_050 Hb_000372_040--Hb_002475_050 Hb_000372_040--Hb_079326_010 Hb_002739_080 Hb_002739_080 Hb_000372_040--Hb_002739_080 Hb_000372_040--Hb_005000_270 Hb_000134_360 Hb_000134_360 Hb_000372_040--Hb_000134_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.72331 3.52225 3.69873 3.36375 13.5361 20.5738
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.43178 3.556 3.62108 4.63674 1.52655

CAGE analysis