Hb_003581_080

Information

Type -
Description -
Location Contig3581: 60403-66297
Sequence    

Annotation

kegg
ID pop:POPTR_0010s04320g
description nitrate transporter family protein
nr
ID XP_012091953.1
description PREDICTED: protein NRT1/ PTR FAMILY 4.6 [Jatropha curcas]
swissprot
ID Q8H157
description Protein NRT1/ PTR FAMILY 4.6 OS=Arabidopsis thaliana GN=NPF4.6 PE=1 SV=1
trembl
ID A0A067JP04
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21705 PE=4 SV=1
Gene Ontology
ID GO:0016020
description protein nrt1 ptr family -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36933: 64763-65376
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003581_080 0.0 - - PREDICTED: protein NRT1/ PTR FAMILY 4.6 [Jatropha curcas]
2 Hb_130389_010 0.162669351 - - PREDICTED: la protein 1 [Jatropha curcas]
3 Hb_007982_050 0.1893947751 - - PREDICTED: somatic embryogenesis receptor kinase 2-like [Jatropha curcas]
4 Hb_000036_050 0.191248822 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 6-like [Camelina sativa]
5 Hb_000526_030 0.196476909 - - PREDICTED: sister chromatid cohesion 1 protein 3-like [Jatropha curcas]
6 Hb_007125_040 0.1967052344 - - PREDICTED: cationic amino acid transporter 1-like [Jatropha curcas]
7 Hb_007520_020 0.1982733655 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1-deoxy-D-xylulose-5-phosphate reductoisomerase [Hevea brasiliensis]
8 Hb_001799_190 0.1998711529 - - PREDICTED: uncharacterized protein LOC105643221 [Jatropha curcas]
9 Hb_000003_340 0.2008817968 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15-like isoform X3 [Jatropha curcas]
10 Hb_003780_090 0.2013108918 - - PREDICTED: transcription factor bHLH128 [Jatropha curcas]
11 Hb_001946_150 0.2029572286 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000283_150 0.2034357607 - - Ankyrin repeat family protein [Theobroma cacao]
13 Hb_020178_060 0.2049577346 - - PREDICTED: nucleobase-ascorbate transporter 3 [Jatropha curcas]
14 Hb_001699_150 0.2079973831 - - hypothetical protein POPTR_0009s13450g [Populus trichocarpa]
15 Hb_002157_050 0.2086414141 - - hypothetical protein JCGZ_16907 [Jatropha curcas]
16 Hb_000538_190 0.2116992178 - - PREDICTED: protein DJ-1 homolog D [Jatropha curcas]
17 Hb_000640_130 0.2144564944 transcription factor TF Family: SET unnamed protein product [Vitis vinifera]
18 Hb_011930_070 0.2174350104 - - PREDICTED: probable AMP deaminase [Jatropha curcas]
19 Hb_021530_010 0.2176297047 - - PREDICTED: la protein 1 [Jatropha curcas]
20 Hb_000197_050 0.2179279788 - - AGPase large subunit protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_003581_080 Hb_003581_080 Hb_130389_010 Hb_130389_010 Hb_003581_080--Hb_130389_010 Hb_007982_050 Hb_007982_050 Hb_003581_080--Hb_007982_050 Hb_000036_050 Hb_000036_050 Hb_003581_080--Hb_000036_050 Hb_000526_030 Hb_000526_030 Hb_003581_080--Hb_000526_030 Hb_007125_040 Hb_007125_040 Hb_003581_080--Hb_007125_040 Hb_007520_020 Hb_007520_020 Hb_003581_080--Hb_007520_020 Hb_130389_010--Hb_007982_050 Hb_130389_010--Hb_000526_030 Hb_004195_120 Hb_004195_120 Hb_130389_010--Hb_004195_120 Hb_021530_010 Hb_021530_010 Hb_130389_010--Hb_021530_010 Hb_127599_010 Hb_127599_010 Hb_130389_010--Hb_127599_010 Hb_004319_070 Hb_004319_070 Hb_130389_010--Hb_004319_070 Hb_077048_010 Hb_077048_010 Hb_007982_050--Hb_077048_010 Hb_001373_160 Hb_001373_160 Hb_007982_050--Hb_001373_160 Hb_002890_100 Hb_002890_100 Hb_007982_050--Hb_002890_100 Hb_008160_030 Hb_008160_030 Hb_007982_050--Hb_008160_030 Hb_000184_150 Hb_000184_150 Hb_007982_050--Hb_000184_150 Hb_000036_050--Hb_007520_020 Hb_000283_150 Hb_000283_150 Hb_000036_050--Hb_000283_150 Hb_001514_130 Hb_001514_130 Hb_000036_050--Hb_001514_130 Hb_004136_040 Hb_004136_040 Hb_000036_050--Hb_004136_040 Hb_002827_020 Hb_002827_020 Hb_000036_050--Hb_002827_020 Hb_000640_130 Hb_000640_130 Hb_000036_050--Hb_000640_130 Hb_000526_030--Hb_004319_070 Hb_005539_020 Hb_005539_020 Hb_000526_030--Hb_005539_020 Hb_000023_350 Hb_000023_350 Hb_000526_030--Hb_000023_350 Hb_000169_170 Hb_000169_170 Hb_000526_030--Hb_000169_170 Hb_012940_040 Hb_012940_040 Hb_000526_030--Hb_012940_040 Hb_002631_040 Hb_002631_040 Hb_007125_040--Hb_002631_040 Hb_001104_110 Hb_001104_110 Hb_007125_040--Hb_001104_110 Hb_000866_090 Hb_000866_090 Hb_007125_040--Hb_000866_090 Hb_001946_150 Hb_001946_150 Hb_007125_040--Hb_001946_150 Hb_010407_170 Hb_010407_170 Hb_007125_040--Hb_010407_170 Hb_001638_090 Hb_001638_090 Hb_007125_040--Hb_001638_090 Hb_003849_240 Hb_003849_240 Hb_007520_020--Hb_003849_240 Hb_001799_190 Hb_001799_190 Hb_007520_020--Hb_001799_190 Hb_000009_120 Hb_000009_120 Hb_007520_020--Hb_000009_120 Hb_007520_020--Hb_000640_130 Hb_003927_010 Hb_003927_010 Hb_007520_020--Hb_003927_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.14384 1.99906 0.916693 0.196926 0.788511 0.382238
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.439662 0.224862 0.0656428 2.19472 0.182901

CAGE analysis