Hb_003581_110

Information

Type -
Description -
Location Contig3581: 79550-81950
Sequence    

Annotation

kegg
ID rcu:RCOM_0698030
description hypothetical protein
nr
ID XP_012091945.1
description PREDICTED: uncharacterized protein LOC105649778 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JML3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21701 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36939: 79351-81239
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003581_110 0.0 - - PREDICTED: uncharacterized protein LOC105649778 isoform X2 [Jatropha curcas]
2 Hb_001016_060 0.0944301638 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000392_280 0.0983694983 - - PREDICTED: pectinesterase 3 [Jatropha curcas]
4 Hb_009801_010 0.1089162368 - - ATPase inhibitor, putative [Ricinus communis]
5 Hb_179511_010 0.1098378138 - - -
6 Hb_045502_010 0.1128599486 - - prefoldin subunit 1 [Jatropha curcas]
7 Hb_002405_020 0.1158393688 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
8 Hb_000808_060 0.1159869716 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 16-like [Jatropha curcas]
9 Hb_000363_340 0.1164875338 - - PREDICTED: syntaxin-52-like isoform X2 [Jatropha curcas]
10 Hb_006173_020 0.1168305519 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
11 Hb_019871_020 0.1187124787 - - PREDICTED: uncharacterized protein LOC105642047 [Jatropha curcas]
12 Hb_000264_060 0.1197009085 - - PREDICTED: RNA polymerase-associated protein RTF1 homolog [Jatropha curcas]
13 Hb_074683_020 0.1199842182 - - PREDICTED: 60S ribosomal protein L27-3 [Jatropha curcas]
14 Hb_001754_170 0.120368731 - - PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Jatropha curcas]
15 Hb_004032_460 0.1227442931 - - -
16 Hb_000322_170 0.1297420824 - - PREDICTED: nucleosome assembly protein 1;3 [Jatropha curcas]
17 Hb_007534_040 0.1305080518 - - PREDICTED: uncharacterized protein LOC105635538 [Jatropha curcas]
18 Hb_000093_130 0.1342556574 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
19 Hb_005016_030 0.1357810483 - - hypothetical protein JCGZ_16549 [Jatropha curcas]
20 Hb_001473_190 0.1361457621 - - 50S ribosomal protein L20 [Hevea brasiliensis]

Gene co-expression network

sample Hb_003581_110 Hb_003581_110 Hb_001016_060 Hb_001016_060 Hb_003581_110--Hb_001016_060 Hb_000392_280 Hb_000392_280 Hb_003581_110--Hb_000392_280 Hb_009801_010 Hb_009801_010 Hb_003581_110--Hb_009801_010 Hb_179511_010 Hb_179511_010 Hb_003581_110--Hb_179511_010 Hb_045502_010 Hb_045502_010 Hb_003581_110--Hb_045502_010 Hb_002405_020 Hb_002405_020 Hb_003581_110--Hb_002405_020 Hb_006173_020 Hb_006173_020 Hb_001016_060--Hb_006173_020 Hb_002149_040 Hb_002149_040 Hb_001016_060--Hb_002149_040 Hb_003605_070 Hb_003605_070 Hb_001016_060--Hb_003605_070 Hb_000692_260 Hb_000692_260 Hb_001016_060--Hb_000692_260 Hb_005016_030 Hb_005016_030 Hb_001016_060--Hb_005016_030 Hb_000363_340 Hb_000363_340 Hb_001016_060--Hb_000363_340 Hb_000392_280--Hb_000363_340 Hb_000173_210 Hb_000173_210 Hb_000392_280--Hb_000173_210 Hb_000300_540 Hb_000300_540 Hb_000392_280--Hb_000300_540 Hb_002025_140 Hb_002025_140 Hb_000392_280--Hb_002025_140 Hb_019871_020 Hb_019871_020 Hb_000392_280--Hb_019871_020 Hb_001956_120 Hb_001956_120 Hb_009801_010--Hb_001956_120 Hb_005015_010 Hb_005015_010 Hb_009801_010--Hb_005015_010 Hb_009801_010--Hb_000392_280 Hb_000307_170 Hb_000307_170 Hb_009801_010--Hb_000307_170 Hb_000976_270 Hb_000976_270 Hb_009801_010--Hb_000976_270 Hb_179511_010--Hb_000392_280 Hb_004032_050 Hb_004032_050 Hb_179511_010--Hb_004032_050 Hb_179511_010--Hb_009801_010 Hb_001754_170 Hb_001754_170 Hb_179511_010--Hb_001754_170 Hb_000258_130 Hb_000258_130 Hb_179511_010--Hb_000258_130 Hb_000619_070 Hb_000619_070 Hb_045502_010--Hb_000619_070 Hb_035360_010 Hb_035360_010 Hb_045502_010--Hb_035360_010 Hb_000038_150 Hb_000038_150 Hb_045502_010--Hb_000038_150 Hb_003673_020 Hb_003673_020 Hb_045502_010--Hb_003673_020 Hb_045502_010--Hb_000392_280 Hb_002405_020--Hb_002149_040 Hb_000771_160 Hb_000771_160 Hb_002405_020--Hb_000771_160 Hb_001357_190 Hb_001357_190 Hb_002405_020--Hb_001357_190 Hb_002405_020--Hb_001016_060 Hb_002405_020--Hb_006173_020 Hb_005410_010 Hb_005410_010 Hb_002405_020--Hb_005410_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.808 10.0641 4.24217 2.97693 47.1737 32.3268
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.29558 15.3573 4.56268 3.28199 0.93018

CAGE analysis