Hb_003581_150

Information

Type -
Description -
Location Contig3581: 113957-116941
Sequence    

Annotation

kegg
ID cic:CICLE_v10032366mg
description hypothetical protein
nr
ID XP_006438620.1
description hypothetical protein CICLE_v10032366mg [Citrus clementina]
swissprot
ID P42056
description Mitochondrial outer membrane protein porin of 36 kDa OS=Solanum tuberosum PE=1 SV=2
trembl
ID V4TJR4
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032366mg PE=4 SV=1
Gene Ontology
ID GO:0005741
description mitochondrial outer membrane protein porin of 36 kda

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36949: 114070-129549
cDNA
(Sanger)
(ID:Location)		 031_O22.ab1: 114497-129525

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003581_150 0.0 - - hypothetical protein CICLE_v10032366mg [Citrus clementina]
2 Hb_000201_120 0.0648336736 - - ubiquitin-protein ligase 2a [Hevea brasiliensis]
3 Hb_000103_320 0.0664241016 - - Stem-specific protein TSJT1, putative [Ricinus communis]
4 Hb_000934_250 0.0703837277 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
5 Hb_002830_020 0.0712425027 - - PREDICTED: outer envelope pore protein 16-3, chloroplastic/mitochondrial [Jatropha curcas]
6 Hb_010175_040 0.0786388934 - - PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Jatropha curcas]
7 Hb_129204_030 0.0818869526 - - PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Jatropha curcas]
8 Hb_001277_070 0.0830500689 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 2 isoform X1 [Jatropha curcas]
9 Hb_000638_250 0.0845876571 - - WD-repeat protein, putative [Ricinus communis]
10 Hb_165132_010 0.0851746767 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]
11 Hb_021596_090 0.0858244706 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B [Jatropha curcas]
12 Hb_001318_250 0.0881750377 - - PREDICTED: uncharacterized protein LOC105642666 [Jatropha curcas]
13 Hb_006831_120 0.0896640544 - - PREDICTED: uncharacterized protein LOC105642121 isoform X1 [Jatropha curcas]
14 Hb_000240_090 0.0900656493 - - Rab5 [Hevea brasiliensis]
15 Hb_007441_330 0.0908674851 - - PREDICTED: acyl carrier protein 1, mitochondrial [Jatropha curcas]
16 Hb_002864_050 0.0916007631 - - PREDICTED: ras-related protein RABH1b [Jatropha curcas]
17 Hb_000340_570 0.0923806743 - - PREDICTED: RNA-binding protein BRN1 [Jatropha curcas]
18 Hb_000261_140 0.0926467115 - - -
19 Hb_134949_020 0.0944320071 - - PREDICTED: thioredoxin-like protein YLS8 [Cucumis sativus]
20 Hb_002234_070 0.0956621656 - - PREDICTED: polynucleotide 5'-hydroxyl-kinase nol9 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003581_150 Hb_003581_150 Hb_000201_120 Hb_000201_120 Hb_003581_150--Hb_000201_120 Hb_000103_320 Hb_000103_320 Hb_003581_150--Hb_000103_320 Hb_000934_250 Hb_000934_250 Hb_003581_150--Hb_000934_250 Hb_002830_020 Hb_002830_020 Hb_003581_150--Hb_002830_020 Hb_010175_040 Hb_010175_040 Hb_003581_150--Hb_010175_040 Hb_129204_030 Hb_129204_030 Hb_003581_150--Hb_129204_030 Hb_000201_120--Hb_002830_020 Hb_001016_030 Hb_001016_030 Hb_000201_120--Hb_001016_030 Hb_001616_040 Hb_001616_040 Hb_000201_120--Hb_001616_040 Hb_000840_030 Hb_000840_030 Hb_000201_120--Hb_000840_030 Hb_000574_480 Hb_000574_480 Hb_000201_120--Hb_000574_480 Hb_000638_250 Hb_000638_250 Hb_000103_320--Hb_000638_250 Hb_006831_120 Hb_006831_120 Hb_000103_320--Hb_006831_120 Hb_152784_010 Hb_152784_010 Hb_000103_320--Hb_152784_010 Hb_001318_250 Hb_001318_250 Hb_000103_320--Hb_001318_250 Hb_007441_330 Hb_007441_330 Hb_000103_320--Hb_007441_330 Hb_000934_250--Hb_001318_250 Hb_003126_090 Hb_003126_090 Hb_000934_250--Hb_003126_090 Hb_065525_020 Hb_065525_020 Hb_000934_250--Hb_065525_020 Hb_000934_250--Hb_152784_010 Hb_010042_010 Hb_010042_010 Hb_000934_250--Hb_010042_010 Hb_002431_050 Hb_002431_050 Hb_002830_020--Hb_002431_050 Hb_012022_120 Hb_012022_120 Hb_002830_020--Hb_012022_120 Hb_002864_050 Hb_002864_050 Hb_002830_020--Hb_002864_050 Hb_094608_010 Hb_094608_010 Hb_002830_020--Hb_094608_010 Hb_000261_140 Hb_000261_140 Hb_010175_040--Hb_000261_140 Hb_000920_110 Hb_000920_110 Hb_010175_040--Hb_000920_110 Hb_143496_010 Hb_143496_010 Hb_010175_040--Hb_143496_010 Hb_000417_360 Hb_000417_360 Hb_010175_040--Hb_000417_360 Hb_001141_140 Hb_001141_140 Hb_010175_040--Hb_001141_140 Hb_010175_040--Hb_001616_040 Hb_000608_370 Hb_000608_370 Hb_129204_030--Hb_000608_370 Hb_000167_140 Hb_000167_140 Hb_129204_030--Hb_000167_140 Hb_001047_230 Hb_001047_230 Hb_129204_030--Hb_001047_230 Hb_021409_030 Hb_021409_030 Hb_129204_030--Hb_021409_030 Hb_000240_090 Hb_000240_090 Hb_129204_030--Hb_000240_090 Hb_001277_070 Hb_001277_070 Hb_129204_030--Hb_001277_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
125.824 59.2065 126.316 121.127 116.856 115.261
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
284.804 303.293 230.06 54.6714 61.6689

CAGE analysis