Hb_003581_220

Information

Type -
Description -
Location Contig3581: 174035-179142
Sequence    

Annotation

kegg
ID pmum:103321620
description ubiquitin-conjugating enzyme E2 2-like
nr
ID CBI32005.3
description unnamed protein product [Vitis vinifera]
swissprot
ID P35130
description Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa GN=UBC2 PE=2 SV=1
trembl
ID D7TND2
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0026g01770 PE=3 SV=1
Gene Ontology
ID GO:0016874
description ubiquitin-conjugating enzyme e2 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36962: 174058-178537 , PASA_asmbl_36963: 174058-178462 , PASA_asmbl_36964: 174277-180076 , PASA_asmbl_36966: 176896-177058
cDNA
(Sanger)
(ID:Location)		 028_E15.ab1: 174517-178462 , 037_C04.ab1: 174368-178381 , 040_A07.ab1: 174368-178381 , 051_D23.ab1: 174379-178360

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003581_220 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_032969_030 0.0819163793 - - calmodulin binding protein, putative [Ricinus communis]
3 Hb_002603_150 0.0905893674 - - PREDICTED: protein yippee-like [Jatropha curcas]
4 Hb_000530_070 0.091254626 - - neutral/alkaline invertase 3 [Hevea brasiliensis]
5 Hb_010402_050 0.0932056473 - - -
6 Hb_001846_070 0.0935679991 - - PREDICTED: fructokinase-1 [Jatropha curcas]
7 Hb_001076_020 0.0948084049 - - PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis]
8 Hb_000069_550 0.1010498711 - - PREDICTED: uncharacterized protein LOC104596457 isoform X1 [Nelumbo nucifera]
9 Hb_002182_030 0.1035428844 - - hypothetical protein Csa_5G139175 [Cucumis sativus]
10 Hb_001157_010 0.1036079187 - - deoxyhypusine synthase, putative [Ricinus communis]
11 Hb_000976_250 0.1091256957 - - -
12 Hb_003326_020 0.1095599013 - - PREDICTED: replication protein A 32 kDa subunit B [Jatropha curcas]
13 Hb_005474_060 0.1126401436 - - hypothetical protein PHAVU_011G019700g [Phaseolus vulgaris]
14 Hb_001314_040 0.1130609696 - - hypothetical protein POPTR_0011s10470g [Populus trichocarpa]
15 Hb_001135_210 0.1139899269 - - PREDICTED: probable adenylate kinase 6, chloroplastic [Jatropha curcas]
16 Hb_002876_120 0.1177074766 - - PREDICTED: protein-tyrosine-phosphatase PTP1 isoform X1 [Jatropha curcas]
17 Hb_000836_130 0.1182482292 - - PREDICTED: uncharacterized protein LOC105642953 isoform X2 [Jatropha curcas]
18 Hb_006569_100 0.1193185164 - - hypothetical protein POPTR_0005s26990g [Populus trichocarpa]
19 Hb_002518_290 0.120910412 - - Acyl-coenzyme A thioesterase 13 [Gossypium arboreum]
20 Hb_007594_120 0.1220629357 transcription factor TF Family: MIKC MADS-box transcription factor 2 [Hevea brasiliensis]

Gene co-expression network

sample Hb_003581_220 Hb_003581_220 Hb_032969_030 Hb_032969_030 Hb_003581_220--Hb_032969_030 Hb_002603_150 Hb_002603_150 Hb_003581_220--Hb_002603_150 Hb_000530_070 Hb_000530_070 Hb_003581_220--Hb_000530_070 Hb_010402_050 Hb_010402_050 Hb_003581_220--Hb_010402_050 Hb_001846_070 Hb_001846_070 Hb_003581_220--Hb_001846_070 Hb_001076_020 Hb_001076_020 Hb_003581_220--Hb_001076_020 Hb_000300_390 Hb_000300_390 Hb_032969_030--Hb_000300_390 Hb_005663_120 Hb_005663_120 Hb_032969_030--Hb_005663_120 Hb_000976_250 Hb_000976_250 Hb_032969_030--Hb_000976_250 Hb_001785_040 Hb_001785_040 Hb_032969_030--Hb_001785_040 Hb_001157_010 Hb_001157_010 Hb_032969_030--Hb_001157_010 Hb_017862_010 Hb_017862_010 Hb_002603_150--Hb_017862_010 Hb_000069_100 Hb_000069_100 Hb_002603_150--Hb_000069_100 Hb_000012_100 Hb_000012_100 Hb_002603_150--Hb_000012_100 Hb_000069_550 Hb_000069_550 Hb_002603_150--Hb_000069_550 Hb_003053_030 Hb_003053_030 Hb_002603_150--Hb_003053_030 Hb_001687_040 Hb_001687_040 Hb_002603_150--Hb_001687_040 Hb_001314_040 Hb_001314_040 Hb_000530_070--Hb_001314_040 Hb_000530_070--Hb_001157_010 Hb_000802_100 Hb_000802_100 Hb_000530_070--Hb_000802_100 Hb_002026_120 Hb_002026_120 Hb_000530_070--Hb_002026_120 Hb_000530_070--Hb_001076_020 Hb_050806_010 Hb_050806_010 Hb_010402_050--Hb_050806_010 Hb_152910_020 Hb_152910_020 Hb_010402_050--Hb_152910_020 Hb_001172_100 Hb_001172_100 Hb_010402_050--Hb_001172_100 Hb_010402_050--Hb_032969_030 Hb_000318_160 Hb_000318_160 Hb_010402_050--Hb_000318_160 Hb_001846_070--Hb_000530_070 Hb_000264_020 Hb_000264_020 Hb_001846_070--Hb_000264_020 Hb_002759_240 Hb_002759_240 Hb_001846_070--Hb_002759_240 Hb_146225_010 Hb_146225_010 Hb_001846_070--Hb_146225_010 Hb_002182_030 Hb_002182_030 Hb_001846_070--Hb_002182_030 Hb_000224_140 Hb_000224_140 Hb_001076_020--Hb_000224_140 Hb_005463_140 Hb_005463_140 Hb_001076_020--Hb_005463_140 Hb_017948_010 Hb_017948_010 Hb_001076_020--Hb_017948_010 Hb_003326_020 Hb_003326_020 Hb_001076_020--Hb_003326_020 Hb_000193_120 Hb_000193_120 Hb_001076_020--Hb_000193_120 Hb_000181_300 Hb_000181_300 Hb_001076_020--Hb_000181_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
68.6777 18.1983 31.2381 79.1562 39.5296 55.2117
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
215.176 387.661 283.181 44.8147 88.7625

CAGE analysis