Hb_003581_230

Information

Type -
Description -
Location Contig3581: 181742-184727
Sequence    

Annotation

kegg
ID rcu:RCOM_0697780
description AMP-activated protein kinase, gamma regulatory subunit, putative
nr
ID XP_012091929.1
description PREDICTED: LOW QUALITY PROTEIN: SNF1-related protein kinase regulatory subunit gamma-1-like [Jatropha curcas]
swissprot
ID Q9CAR3
description SNF1-related protein kinase regulatory subunit gamma-1-like OS=Arabidopsis thaliana GN=CBSCBS2 PE=1 SV=1
trembl
ID B9S2A6
description AMP-activated protein kinase, gamma regulatory subunit, putative OS=Ricinus communis GN=RCOM_0697780 PE=4 SV=1
Gene Ontology
ID GO:0016301
description snf1-related protein kinase regulatory subunit gamma-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36967: 181746-184715
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003581_230 0.0 - - PREDICTED: LOW QUALITY PROTEIN: SNF1-related protein kinase regulatory subunit gamma-1-like [Jatropha curcas]
2 Hb_004220_010 0.1002650346 - - PREDICTED: uncharacterized protein LOC105642366 [Jatropha curcas]
3 Hb_029576_060 0.1031046789 - - PREDICTED: uncharacterized protein LOC105646366 [Jatropha curcas]
4 Hb_001148_110 0.1123203225 - - -
5 Hb_000976_400 0.1207843163 - - synaptotagmin, putative [Ricinus communis]
6 Hb_000032_360 0.1222488437 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Jatropha curcas]
7 Hb_001439_080 0.1225979837 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
8 Hb_000017_200 0.1235906393 - - PREDICTED: uncharacterized protein LOC105645766 [Jatropha curcas]
9 Hb_000134_040 0.1314514164 - - PREDICTED: 30S ribosomal protein 2, chloroplastic [Jatropha curcas]
10 Hb_001729_030 0.1319414903 - - hypothetical protein VITISV_044457 [Vitis vinifera]
11 Hb_000622_050 0.1369254238 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000020_090 0.1369576145 - - hypothetical protein JCGZ_09084 [Jatropha curcas]
13 Hb_000932_110 0.1383669594 - - Root phototropism protein, putative [Ricinus communis]
14 Hb_004223_150 0.1390424223 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like [Jatropha curcas]
15 Hb_009838_070 0.1412046718 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Jatropha curcas]
16 Hb_000539_040 0.1424734639 - - PREDICTED: uncharacterized protein LOC105636110 isoform X1 [Jatropha curcas]
17 Hb_000922_200 0.1425424959 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0012s08280g [Populus trichocarpa]
18 Hb_125573_010 0.1425732198 - - ATP-binding cassette transporter, putative [Ricinus communis]
19 Hb_001638_200 0.1436999067 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 43 [Jatropha curcas]
20 Hb_004102_060 0.143776836 - - JHL25H03.11 [Jatropha curcas]

Gene co-expression network

sample Hb_003581_230 Hb_003581_230 Hb_004220_010 Hb_004220_010 Hb_003581_230--Hb_004220_010 Hb_029576_060 Hb_029576_060 Hb_003581_230--Hb_029576_060 Hb_001148_110 Hb_001148_110 Hb_003581_230--Hb_001148_110 Hb_000976_400 Hb_000976_400 Hb_003581_230--Hb_000976_400 Hb_000032_360 Hb_000032_360 Hb_003581_230--Hb_000032_360 Hb_001439_080 Hb_001439_080 Hb_003581_230--Hb_001439_080 Hb_000622_050 Hb_000622_050 Hb_004220_010--Hb_000622_050 Hb_001942_010 Hb_001942_010 Hb_004220_010--Hb_001942_010 Hb_000904_120 Hb_000904_120 Hb_004220_010--Hb_000904_120 Hb_004220_010--Hb_000976_400 Hb_084303_010 Hb_084303_010 Hb_004220_010--Hb_084303_010 Hb_002276_220 Hb_002276_220 Hb_029576_060--Hb_002276_220 Hb_000163_190 Hb_000163_190 Hb_029576_060--Hb_000163_190 Hb_034235_010 Hb_034235_010 Hb_029576_060--Hb_034235_010 Hb_000608_270 Hb_000608_270 Hb_029576_060--Hb_000608_270 Hb_002704_060 Hb_002704_060 Hb_029576_060--Hb_002704_060 Hb_000722_030 Hb_000722_030 Hb_001148_110--Hb_000722_030 Hb_001638_200 Hb_001638_200 Hb_001148_110--Hb_001638_200 Hb_002835_310 Hb_002835_310 Hb_001148_110--Hb_002835_310 Hb_000156_110 Hb_000156_110 Hb_001148_110--Hb_000156_110 Hb_001148_110--Hb_001942_010 Hb_002042_180 Hb_002042_180 Hb_001148_110--Hb_002042_180 Hb_005725_240 Hb_005725_240 Hb_000976_400--Hb_005725_240 Hb_000976_400--Hb_000622_050 Hb_000212_410 Hb_000212_410 Hb_000976_400--Hb_000212_410 Hb_000976_400--Hb_001148_110 Hb_000816_240 Hb_000816_240 Hb_000976_400--Hb_000816_240 Hb_000130_130 Hb_000130_130 Hb_000032_360--Hb_000130_130 Hb_004447_050 Hb_004447_050 Hb_000032_360--Hb_004447_050 Hb_001141_350 Hb_001141_350 Hb_000032_360--Hb_001141_350 Hb_018133_070 Hb_018133_070 Hb_000032_360--Hb_018133_070 Hb_001221_060 Hb_001221_060 Hb_000032_360--Hb_001221_060 Hb_001439_080--Hb_001638_200 Hb_007617_010 Hb_007617_010 Hb_001439_080--Hb_007617_010 Hb_001080_190 Hb_001080_190 Hb_001439_080--Hb_001080_190 Hb_009486_050 Hb_009486_050 Hb_001439_080--Hb_009486_050 Hb_001439_080--Hb_000722_030 Hb_000017_200 Hb_000017_200 Hb_001439_080--Hb_000017_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.81832 2.66693 36.8793 23.5117 2.42569 1.09918
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.136639 0.0645023 0.0405644 0.968352 28.4672

CAGE analysis