Hb_003581_240

Information

Type transcription factor
Description TF Family: WRKY
Location Contig3581: 185906-189387
Sequence    

Annotation

kegg
ID rcu:RCOM_0697770
description WRKY transcription factor, putative
nr
ID XP_002520124.1
description WRKY transcription factor, putative [Ricinus communis]
swissprot
ID Q9LXG8
description Probable WRKY transcription factor 72 OS=Arabidopsis thaliana GN=WRKY72 PE=2 SV=1
trembl
ID B9S2A5
description WRKY transcription factor, putative OS=Ricinus communis GN=RCOM_0697770 PE=4 SV=1
Gene Ontology
ID GO:0003700
description probable wrky transcription factor 72

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36968: 187497-188864
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003581_240 0.0 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
2 Hb_183700_010 0.0607077322 - - UDP-glucosyltransferase, putative [Ricinus communis]
3 Hb_000813_120 0.0878511192 - - PREDICTED: serine carboxypeptidase-like 18 [Tarenaya hassleriana]
4 Hb_007483_030 0.093006713 - - -
5 Hb_027288_010 0.0947501911 - - mutt domain protein, putative [Ricinus communis]
6 Hb_006919_010 0.1086245555 - - PREDICTED: putative wall-associated receptor kinase-like 16 [Vitis vinifera]
7 Hb_014113_010 0.109785943 - - PREDICTED: ent-copalyl diphosphate synthase, chloroplastic [Jatropha curcas]
8 Hb_004586_080 0.1117032063 - - hypothetical protein POPTR_0002s10520g [Populus trichocarpa]
9 Hb_000407_110 0.1156416043 - - ripening-induced ACC oxidase [Carica papaya]
10 Hb_002374_110 0.1198477692 - - PREDICTED: uncharacterized protein LOC105638965 [Jatropha curcas]
11 Hb_000101_050 0.1211342819 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
12 Hb_059162_010 0.122519024 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_041769_010 0.1265538486 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
14 Hb_002376_030 0.1272265776 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_001173_050 0.1280501248 - - DUF26 domain-containing protein 2 precursor, putative [Ricinus communis]
16 Hb_002272_160 0.1280579218 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
17 Hb_003010_040 0.1293191933 - - hypothetical protein AALP_AA7G248200 [Arabis alpina]
18 Hb_008080_040 0.1295716739 - - hypothetical protein EUGRSUZ_D00834 [Eucalyptus grandis]
19 Hb_002766_040 0.1305815556 - - 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase, putative [Ricinus communis]
20 Hb_003166_040 0.1305889576 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.1 [Jatropha curcas]

Gene co-expression network

sample Hb_003581_240 Hb_003581_240 Hb_183700_010 Hb_183700_010 Hb_003581_240--Hb_183700_010 Hb_000813_120 Hb_000813_120 Hb_003581_240--Hb_000813_120 Hb_007483_030 Hb_007483_030 Hb_003581_240--Hb_007483_030 Hb_027288_010 Hb_027288_010 Hb_003581_240--Hb_027288_010 Hb_006919_010 Hb_006919_010 Hb_003581_240--Hb_006919_010 Hb_014113_010 Hb_014113_010 Hb_003581_240--Hb_014113_010 Hb_183700_010--Hb_000813_120 Hb_002766_040 Hb_002766_040 Hb_183700_010--Hb_002766_040 Hb_007735_010 Hb_007735_010 Hb_183700_010--Hb_007735_010 Hb_183700_010--Hb_014113_010 Hb_003010_040 Hb_003010_040 Hb_183700_010--Hb_003010_040 Hb_039342_030 Hb_039342_030 Hb_000813_120--Hb_039342_030 Hb_004185_040 Hb_004185_040 Hb_000813_120--Hb_004185_040 Hb_004195_040 Hb_004195_040 Hb_000813_120--Hb_004195_040 Hb_012019_030 Hb_012019_030 Hb_000813_120--Hb_012019_030 Hb_001173_050 Hb_001173_050 Hb_000813_120--Hb_001173_050 Hb_007483_030--Hb_027288_010 Hb_007747_030 Hb_007747_030 Hb_007483_030--Hb_007747_030 Hb_003052_070 Hb_003052_070 Hb_007483_030--Hb_003052_070 Hb_003166_040 Hb_003166_040 Hb_007483_030--Hb_003166_040 Hb_000407_110 Hb_000407_110 Hb_007483_030--Hb_000407_110 Hb_002272_160 Hb_002272_160 Hb_007483_030--Hb_002272_160 Hb_027288_010--Hb_003052_070 Hb_027288_010--Hb_007747_030 Hb_027288_010--Hb_003166_040 Hb_000567_310 Hb_000567_310 Hb_027288_010--Hb_000567_310 Hb_027288_010--Hb_002272_160 Hb_006919_010--Hb_000407_110 Hb_001609_080 Hb_001609_080 Hb_006919_010--Hb_001609_080 Hb_002374_110 Hb_002374_110 Hb_006919_010--Hb_002374_110 Hb_002376_030 Hb_002376_030 Hb_006919_010--Hb_002376_030 Hb_006919_010--Hb_007483_030 Hb_006919_010--Hb_003166_040 Hb_084495_010 Hb_084495_010 Hb_014113_010--Hb_084495_010 Hb_099198_010 Hb_099198_010 Hb_014113_010--Hb_099198_010 Hb_003121_020 Hb_003121_020 Hb_014113_010--Hb_003121_020 Hb_014113_010--Hb_002766_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.237169 0.0747758 0.0239929 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.768669 0

CAGE analysis