Hb_003581_260

Information

Type -
Description -
Location Contig3581: 206948-210156
Sequence    

Annotation

kegg
ID tcc:TCM_011772
description Calcineurin-like metallo-phosphoesterase superfamily protein isoform 1
nr
ID XP_012091916.1
description PREDICTED: vacuolar protein sorting-associated protein 29-like [Jatropha curcas]
swissprot
ID Q9STT2
description Vacuolar protein sorting-associated protein 29 OS=Arabidopsis thaliana GN=VPS29 PE=2 SV=1
trembl
ID A0A067JBP4
description Vacuolar protein sorting-associated protein 29 OS=Jatropha curcas GN=JCGZ_21682 PE=3 SV=1
Gene Ontology
ID GO:0005771
description vacuolar protein sorting-associated protein 29-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36970: 207025-210191
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003581_260 0.0 - - PREDICTED: vacuolar protein sorting-associated protein 29-like [Jatropha curcas]
2 Hb_002876_120 0.0864090282 - - PREDICTED: protein-tyrosine-phosphatase PTP1 isoform X1 [Jatropha curcas]
3 Hb_001159_080 0.0888138964 - - hypothetical protein JCGZ_20745 [Jatropha curcas]
4 Hb_007594_120 0.0959434248 transcription factor TF Family: MIKC MADS-box transcription factor 2 [Hevea brasiliensis]
5 Hb_000061_300 0.0962084931 - - hypothetical protein JCGZ_11668 [Jatropha curcas]
6 Hb_002182_030 0.1002863245 - - hypothetical protein Csa_5G139175 [Cucumis sativus]
7 Hb_001135_210 0.1017668413 - - PREDICTED: probable adenylate kinase 6, chloroplastic [Jatropha curcas]
8 Hb_000069_550 0.1022893366 - - PREDICTED: uncharacterized protein LOC104596457 isoform X1 [Nelumbo nucifera]
9 Hb_000125_030 0.1026260134 transcription factor TF Family: mTERF hypothetical protein PRUPE_ppa019510mg, partial [Prunus persica]
10 Hb_020301_040 0.1034310263 - - PREDICTED: mitochondrial substrate carrier family protein P [Jatropha curcas]
11 Hb_000802_100 0.1042695656 - - PREDICTED: uncharacterized protein LOC105634009 [Jatropha curcas]
12 Hb_001096_110 0.1045633909 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
13 Hb_001157_010 0.1055059468 - - deoxyhypusine synthase, putative [Ricinus communis]
14 Hb_006472_050 0.1065831927 - - PREDICTED: ubiquitin-conjugating enzyme E2 7 isoform X2 [Elaeis guineensis]
15 Hb_006569_100 0.1066926404 - - hypothetical protein POPTR_0005s26990g [Populus trichocarpa]
16 Hb_000530_070 0.106753464 - - neutral/alkaline invertase 3 [Hevea brasiliensis]
17 Hb_029866_020 0.1078207649 - - PREDICTED: mitochondrial carrier protein MTM1 [Jatropha curcas]
18 Hb_003551_050 0.1081950589 - - PREDICTED: mitochondrial fission 1 protein A [Jatropha curcas]
19 Hb_031862_110 0.1082378537 - - calcium-dependent protein kinase [Hevea brasiliensis]
20 Hb_001575_020 0.108381329 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003581_260 Hb_003581_260 Hb_002876_120 Hb_002876_120 Hb_003581_260--Hb_002876_120 Hb_001159_080 Hb_001159_080 Hb_003581_260--Hb_001159_080 Hb_007594_120 Hb_007594_120 Hb_003581_260--Hb_007594_120 Hb_000061_300 Hb_000061_300 Hb_003581_260--Hb_000061_300 Hb_002182_030 Hb_002182_030 Hb_003581_260--Hb_002182_030 Hb_001135_210 Hb_001135_210 Hb_003581_260--Hb_001135_210 Hb_002876_120--Hb_007594_120 Hb_003579_030 Hb_003579_030 Hb_002876_120--Hb_003579_030 Hb_020301_040 Hb_020301_040 Hb_002876_120--Hb_020301_040 Hb_001157_010 Hb_001157_010 Hb_002876_120--Hb_001157_010 Hb_000012_100 Hb_000012_100 Hb_002876_120--Hb_000012_100 Hb_002999_050 Hb_002999_050 Hb_002876_120--Hb_002999_050 Hb_001096_110 Hb_001096_110 Hb_001159_080--Hb_001096_110 Hb_000327_220 Hb_000327_220 Hb_001159_080--Hb_000327_220 Hb_000141_020 Hb_000141_020 Hb_001159_080--Hb_000141_020 Hb_000125_030 Hb_000125_030 Hb_001159_080--Hb_000125_030 Hb_000099_130 Hb_000099_130 Hb_001159_080--Hb_000099_130 Hb_000975_300 Hb_000975_300 Hb_007594_120--Hb_000975_300 Hb_000069_550 Hb_000069_550 Hb_007594_120--Hb_000069_550 Hb_000062_340 Hb_000062_340 Hb_007594_120--Hb_000062_340 Hb_007594_120--Hb_020301_040 Hb_024714_060 Hb_024714_060 Hb_007594_120--Hb_024714_060 Hb_001575_020 Hb_001575_020 Hb_000061_300--Hb_001575_020 Hb_001616_060 Hb_001616_060 Hb_000061_300--Hb_001616_060 Hb_007382_150 Hb_007382_150 Hb_000061_300--Hb_007382_150 Hb_000046_290 Hb_000046_290 Hb_000061_300--Hb_000046_290 Hb_002603_160 Hb_002603_160 Hb_000061_300--Hb_002603_160 Hb_006472_050 Hb_006472_050 Hb_002182_030--Hb_006472_050 Hb_002182_030--Hb_001135_210 Hb_002182_030--Hb_000975_300 Hb_002182_030--Hb_007594_120 Hb_002182_030--Hb_002876_120 Hb_001232_140 Hb_001232_140 Hb_001135_210--Hb_001232_140 Hb_001135_210--Hb_000099_130 Hb_000784_030 Hb_000784_030 Hb_001135_210--Hb_000784_030 Hb_001135_210--Hb_001157_010 Hb_001135_210--Hb_006472_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.9741 12.2077 23.2496 25.0864 24.6725 28.6359
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
89.4961 106.69 158.502 31.8438 23.2077

CAGE analysis