Hb_003581_280

Information

Type -
Description -
Location Contig3581: 214260-218826
Sequence    

Annotation

kegg
ID pop:POPTR_0010s10380g
description POPTRDRAFT_822006; KINASE 2B family protein
nr
ID XP_002315799.1
description KINASE 2B family protein [Populus trichocarpa]
swissprot
ID O49840
description Protein kinase 2B, chloroplastic OS=Arabidopsis thaliana GN=APK2B PE=2 SV=1
trembl
ID B9HVA3
description KINASE 2B family protein OS=Populus trichocarpa GN=POPTR_0010s10380g PE=3 SV=1
Gene Ontology
ID GO:0004672
description kinase 2b family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36974: 214300-218680
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003581_280 0.0 - - KINASE 2B family protein [Populus trichocarpa]
2 Hb_002900_120 0.084018519 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g11320 [Jatropha curcas]
3 Hb_000045_260 0.090263171 - - protein with unknown function [Ricinus communis]
4 Hb_124677_040 0.0905796931 - - PREDICTED: uncharacterized protein LOC105650471 [Jatropha curcas]
5 Hb_000421_230 0.0936755134 - - retinal degeneration B beta, putative [Ricinus communis]
6 Hb_005332_140 0.098769875 - - PREDICTED: uncharacterized membrane protein At3g27390 isoform X2 [Jatropha curcas]
7 Hb_004108_240 0.1039155141 - - hypothetical protein POPTR_0002s05550g [Populus trichocarpa]
8 Hb_000815_310 0.1067941476 - - protein kinase, putative [Ricinus communis]
9 Hb_002965_050 0.1074633424 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR2 [Jatropha curcas]
10 Hb_003177_070 0.1077428376 - - PREDICTED: ATP sulfurylase 2 [Jatropha curcas]
11 Hb_033152_090 0.1079719753 - - PREDICTED: serine/threonine-protein kinase SRK2E isoform X2 [Gossypium raimondii]
12 Hb_000638_280 0.1088002621 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
13 Hb_000035_050 0.1109435228 - - PREDICTED: probable CCR4-associated factor 1 homolog 7 [Jatropha curcas]
14 Hb_001898_130 0.1110738671 - - ATP binding protein, putative [Ricinus communis]
15 Hb_018790_050 0.1121779553 - - hypothetical protein CICLE_v10017858mg [Citrus clementina]
16 Hb_000156_090 0.1151046753 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS3 isoform X1 [Jatropha curcas]
17 Hb_001376_010 0.1154166316 - - diacylglycerol kinase, alpha, putative [Ricinus communis]
18 Hb_002876_210 0.1156678447 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Jatropha curcas]
19 Hb_007416_260 0.1159148187 - - PREDICTED: E3 ubiquitin-protein ligase RNF12-A-like [Jatropha curcas]
20 Hb_004117_170 0.1173870536 - - PREDICTED: probable receptor-like protein kinase At3g55450 [Jatropha curcas]

Gene co-expression network

sample Hb_003581_280 Hb_003581_280 Hb_002900_120 Hb_002900_120 Hb_003581_280--Hb_002900_120 Hb_000045_260 Hb_000045_260 Hb_003581_280--Hb_000045_260 Hb_124677_040 Hb_124677_040 Hb_003581_280--Hb_124677_040 Hb_000421_230 Hb_000421_230 Hb_003581_280--Hb_000421_230 Hb_005332_140 Hb_005332_140 Hb_003581_280--Hb_005332_140 Hb_004108_240 Hb_004108_240 Hb_003581_280--Hb_004108_240 Hb_002965_050 Hb_002965_050 Hb_002900_120--Hb_002965_050 Hb_002876_210 Hb_002876_210 Hb_002900_120--Hb_002876_210 Hb_000156_090 Hb_000156_090 Hb_002900_120--Hb_000156_090 Hb_000711_010 Hb_000711_010 Hb_002900_120--Hb_000711_010 Hb_004774_020 Hb_004774_020 Hb_002900_120--Hb_004774_020 Hb_011631_010 Hb_011631_010 Hb_000045_260--Hb_011631_010 Hb_000638_280 Hb_000638_280 Hb_000045_260--Hb_000638_280 Hb_000454_140 Hb_000454_140 Hb_000045_260--Hb_000454_140 Hb_002897_050 Hb_002897_050 Hb_000045_260--Hb_002897_050 Hb_000084_240 Hb_000084_240 Hb_000045_260--Hb_000084_240 Hb_000163_230 Hb_000163_230 Hb_000045_260--Hb_000163_230 Hb_124677_040--Hb_004108_240 Hb_124677_040--Hb_002900_120 Hb_124677_040--Hb_004774_020 Hb_003925_040 Hb_003925_040 Hb_124677_040--Hb_003925_040 Hb_000925_030 Hb_000925_030 Hb_124677_040--Hb_000925_030 Hb_000421_230--Hb_000045_260 Hb_004125_060 Hb_004125_060 Hb_000421_230--Hb_004125_060 Hb_000421_230--Hb_000638_280 Hb_000421_230--Hb_004108_240 Hb_000421_230--Hb_000925_030 Hb_003177_070 Hb_003177_070 Hb_005332_140--Hb_003177_070 Hb_001102_090 Hb_001102_090 Hb_005332_140--Hb_001102_090 Hb_001474_050 Hb_001474_050 Hb_005332_140--Hb_001474_050 Hb_002281_010 Hb_002281_010 Hb_005332_140--Hb_002281_010 Hb_005332_140--Hb_002900_120 Hb_004108_240--Hb_000045_260 Hb_004108_240--Hb_003925_040 Hb_001376_010 Hb_001376_010 Hb_004108_240--Hb_001376_010 Hb_003147_060 Hb_003147_060 Hb_004108_240--Hb_003147_060 Hb_004108_240--Hb_004774_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.15471 42.8316 36.208 24.2363 6.19611 5.16051
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.77397 9.20263 8.80526 6.29388 15.7075

CAGE analysis