Hb_003581_290

Information

Type -
Description -
Location Contig3581: 224334-235528
Sequence    

Annotation

kegg
ID fve:101311469
description UDP-galactose/UDP-glucose transporter 3-like
nr
ID XP_004297325.1
description PREDICTED: UDP-galactose/UDP-glucose transporter 3 [Fragaria vesca subsp. vesca]
swissprot
ID Q9M9S6
description UDP-galactose/UDP-glucose transporter 3 OS=Arabidopsis thaliana GN=UTR3 PE=1 SV=1
trembl
ID A0A061EI79
description UDP-galactose transporter 3 isoform 2 OS=Theobroma cacao GN=TCM_011775 PE=4 SV=1
Gene Ontology
ID GO:0055085
description udp-galactose udp-glucose transporter 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36975: 234009-234256
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003581_290 0.0 - - PREDICTED: UDP-galactose/UDP-glucose transporter 3 [Fragaria vesca subsp. vesca]
2 Hb_004339_030 0.0691998568 - - PREDICTED: 7-methylguanosine phosphate-specific 5'-nucleotidase A isoform X2 [Jatropha curcas]
3 Hb_029920_030 0.1038110587 - - PREDICTED: 2-Cys peroxiredoxin BAS1, chloroplastic-like [Jatropha curcas]
4 Hb_000816_200 0.1084340909 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
5 Hb_008147_080 0.1089073737 - - PREDICTED: uncharacterized protein LOC105646805 isoform X2 [Jatropha curcas]
6 Hb_000008_350 0.1128498273 - - -
7 Hb_000058_080 0.1151045303 - - PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
8 Hb_003124_120 0.1203389436 - - PREDICTED: fructose-1,6-bisphosphatase, cytosolic [Jatropha curcas]
9 Hb_008375_010 0.1233851701 - - PREDICTED: carbon catabolite repressor protein 4 homolog 4 isoform X3 [Pyrus x bretschneideri]
10 Hb_005725_220 0.1235313265 - - PREDICTED: uncharacterized protein LOC105630808 [Jatropha curcas]
11 Hb_010288_060 0.1242478136 - - PREDICTED: dnaJ protein ERDJ3B [Jatropha curcas]
12 Hb_004644_030 0.126293155 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
13 Hb_016461_030 0.1266911731 - - PREDICTED: putative leucine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
14 Hb_121089_040 0.1310231198 - - PREDICTED: GDSL esterase/lipase At4g10955 [Jatropha curcas]
15 Hb_007441_310 0.1332619974 - - PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Jatropha curcas]
16 Hb_000983_070 0.1355857859 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001195_770 0.1360421628 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
18 Hb_004631_090 0.1361597776 - - PREDICTED: probable glucan 1,3-beta-glucosidase A [Jatropha curcas]
19 Hb_000866_050 0.1385180372 - - phosphate transporter [Manihot esculenta]
20 Hb_001789_200 0.1407698825 - - PREDICTED: sec-independent protein translocase protein TATB, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_003581_290 Hb_003581_290 Hb_004339_030 Hb_004339_030 Hb_003581_290--Hb_004339_030 Hb_029920_030 Hb_029920_030 Hb_003581_290--Hb_029920_030 Hb_000816_200 Hb_000816_200 Hb_003581_290--Hb_000816_200 Hb_008147_080 Hb_008147_080 Hb_003581_290--Hb_008147_080 Hb_000008_350 Hb_000008_350 Hb_003581_290--Hb_000008_350 Hb_000058_080 Hb_000058_080 Hb_003581_290--Hb_000058_080 Hb_010288_060 Hb_010288_060 Hb_004339_030--Hb_010288_060 Hb_004339_030--Hb_008147_080 Hb_004339_030--Hb_000008_350 Hb_000739_210 Hb_000739_210 Hb_004339_030--Hb_000739_210 Hb_008375_010 Hb_008375_010 Hb_004339_030--Hb_008375_010 Hb_029920_030--Hb_000816_200 Hb_016461_030 Hb_016461_030 Hb_029920_030--Hb_016461_030 Hb_001195_770 Hb_001195_770 Hb_029920_030--Hb_001195_770 Hb_005276_010 Hb_005276_010 Hb_029920_030--Hb_005276_010 Hb_000480_040 Hb_000480_040 Hb_029920_030--Hb_000480_040 Hb_000164_140 Hb_000164_140 Hb_029920_030--Hb_000164_140 Hb_000816_200--Hb_016461_030 Hb_000816_200--Hb_001195_770 Hb_003124_120 Hb_003124_120 Hb_000816_200--Hb_003124_120 Hb_000189_450 Hb_000189_450 Hb_000816_200--Hb_000189_450 Hb_007441_310 Hb_007441_310 Hb_000816_200--Hb_007441_310 Hb_004644_030 Hb_004644_030 Hb_008147_080--Hb_004644_030 Hb_005218_080 Hb_005218_080 Hb_008147_080--Hb_005218_080 Hb_008147_080--Hb_008375_010 Hb_001578_020 Hb_001578_020 Hb_008147_080--Hb_001578_020 Hb_000388_060 Hb_000388_060 Hb_008147_080--Hb_000388_060 Hb_000077_150 Hb_000077_150 Hb_008147_080--Hb_000077_150 Hb_001677_220 Hb_001677_220 Hb_000008_350--Hb_001677_220 Hb_000008_350--Hb_008375_010 Hb_000008_350--Hb_008147_080 Hb_000008_350--Hb_000816_200 Hb_000008_350--Hb_003124_120 Hb_000866_050 Hb_000866_050 Hb_000058_080--Hb_000866_050 Hb_001792_030 Hb_001792_030 Hb_000058_080--Hb_001792_030 Hb_158144_020 Hb_158144_020 Hb_000058_080--Hb_158144_020 Hb_000594_100 Hb_000594_100 Hb_000058_080--Hb_000594_100 Hb_000058_080--Hb_003124_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.926314 0.536293 4.52868 4.20024 1.44907 1.75997
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.04795 2.11736 3.13118 3.96504 11.9351

CAGE analysis