Hb_003581_300

Information

Type transcription factor
Description TF Family: MYB
Location Contig3581: 236825-242376
Sequence    

Annotation

kegg
ID rcu:RCOM_0697470
description myb124, putative
nr
ID XP_012067595.1
description PREDICTED: uncharacterized protein LOC105630404 isoform X1 [Jatropha curcas]
swissprot
ID P10244
description Myb-related protein B OS=Homo sapiens GN=MYBL2 PE=1 SV=1
trembl
ID A0A067LAN9
description MYB family protein OS=Jatropha curcas GN=JCGZ_15571 PE=4 SV=1
Gene Ontology
ID GO:0003677
description pre-mrna-splicing factor cef1-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36980: 240540-240653
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003581_300 0.0 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105630404 isoform X1 [Jatropha curcas]
2 Hb_006018_060 0.1155825577 - - Zinc finger SWIM domain-containing protein 7 isoform 1 [Theobroma cacao]
3 Hb_015430_010 0.1317658831 - - PREDICTED: uncharacterized protein LOC105125506 isoform X2 [Populus euphratica]
4 Hb_054074_010 0.1636877348 - - PREDICTED: uncharacterized protein LOC105645601 [Jatropha curcas]
5 Hb_002260_030 0.1638329578 - - PREDICTED: putative glutamine amidotransferase YLR126C [Jatropha curcas]
6 Hb_002157_040 0.1666701123 - - PREDICTED: uncharacterized protein LOC105628778 [Jatropha curcas]
7 Hb_000030_200 0.1669829004 - - PREDICTED: early nodulin-93-like [Populus euphratica]
8 Hb_000178_120 0.1701189274 - - PREDICTED: histone H2B [Jatropha curcas]
9 Hb_000809_060 0.1740711543 transcription factor TF Family: LOB LOB domain-containing 36 -like protein [Gossypium arboreum]
10 Hb_002391_220 0.1793350566 - - PREDICTED: UPF0548 protein At2g17695 [Jatropha curcas]
11 Hb_000676_340 0.1801165843 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_000072_210 0.183794011 - - PREDICTED: pentatricopeptide repeat-containing protein At5g38730 [Jatropha curcas]
13 Hb_001304_140 0.1844404789 - - PREDICTED: transmembrane protein 256 homolog [Jatropha curcas]
14 Hb_000445_490 0.1854667485 - - -
15 Hb_000742_280 0.1868717942 - - ATP binding protein, putative [Ricinus communis]
16 Hb_007441_260 0.1879348016 - - PREDICTED: ATP synthase subunit delta', mitochondrial-like [Jatropha curcas]
17 Hb_000914_170 0.1890454257 - - hypothetical protein JCGZ_25909 [Jatropha curcas]
18 Hb_000087_130 0.1892333251 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial [Jatropha curcas]
19 Hb_050806_010 0.1892572225 - - PREDICTED: ubiquitin-conjugating enzyme E2-17 kDa [Jatropha curcas]
20 Hb_010560_030 0.1897338817 - - PREDICTED: mitochondrial pyruvate carrier 4-like [Jatropha curcas]

Gene co-expression network

sample Hb_003581_300 Hb_003581_300 Hb_006018_060 Hb_006018_060 Hb_003581_300--Hb_006018_060 Hb_015430_010 Hb_015430_010 Hb_003581_300--Hb_015430_010 Hb_054074_010 Hb_054074_010 Hb_003581_300--Hb_054074_010 Hb_002260_030 Hb_002260_030 Hb_003581_300--Hb_002260_030 Hb_002157_040 Hb_002157_040 Hb_003581_300--Hb_002157_040 Hb_000030_200 Hb_000030_200 Hb_003581_300--Hb_000030_200 Hb_006018_060--Hb_002157_040 Hb_006018_060--Hb_015430_010 Hb_000676_340 Hb_000676_340 Hb_006018_060--Hb_000676_340 Hb_000178_120 Hb_000178_120 Hb_006018_060--Hb_000178_120 Hb_006018_060--Hb_002260_030 Hb_001105_090 Hb_001105_090 Hb_015430_010--Hb_001105_090 Hb_015430_010--Hb_000178_120 Hb_002042_080 Hb_002042_080 Hb_015430_010--Hb_002042_080 Hb_009778_040 Hb_009778_040 Hb_015430_010--Hb_009778_040 Hb_023386_010 Hb_023386_010 Hb_054074_010--Hb_023386_010 Hb_001304_140 Hb_001304_140 Hb_054074_010--Hb_001304_140 Hb_010582_010 Hb_010582_010 Hb_054074_010--Hb_010582_010 Hb_000820_130 Hb_000820_130 Hb_054074_010--Hb_000820_130 Hb_008699_020 Hb_008699_020 Hb_054074_010--Hb_008699_020 Hb_001604_030 Hb_001604_030 Hb_054074_010--Hb_001604_030 Hb_001357_120 Hb_001357_120 Hb_002260_030--Hb_001357_120 Hb_002774_050 Hb_002774_050 Hb_002260_030--Hb_002774_050 Hb_000914_170 Hb_000914_170 Hb_002260_030--Hb_000914_170 Hb_008948_100 Hb_008948_100 Hb_002260_030--Hb_008948_100 Hb_000175_030 Hb_000175_030 Hb_002260_030--Hb_000175_030 Hb_000705_290 Hb_000705_290 Hb_002260_030--Hb_000705_290 Hb_111985_110 Hb_111985_110 Hb_002157_040--Hb_111985_110 Hb_006573_290 Hb_006573_290 Hb_002157_040--Hb_006573_290 Hb_021409_080 Hb_021409_080 Hb_002157_040--Hb_021409_080 Hb_001019_150 Hb_001019_150 Hb_002157_040--Hb_001019_150 Hb_000087_130 Hb_000087_130 Hb_000030_200--Hb_000087_130 Hb_072922_020 Hb_072922_020 Hb_000030_200--Hb_072922_020 Hb_000948_220 Hb_000948_220 Hb_000030_200--Hb_000948_220 Hb_000384_120 Hb_000384_120 Hb_000030_200--Hb_000384_120 Hb_001155_040 Hb_001155_040 Hb_000030_200--Hb_001155_040 Hb_010560_030 Hb_010560_030 Hb_000030_200--Hb_010560_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.08229 0.327536 2.06055 3.74585 0.285153 0.393261
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.2532 6.38521 2.94858 2.06569 1.49013

CAGE analysis