Hb_003582_030

Information

Type -
Description -
Location Contig3582: 57437-60844
Sequence    

Annotation

kegg
ID rcu:RCOM_0777790
description serine/threonine-protein kinase bri1, putative (EC:2.7.11.30 1.3.1.74)
nr
ID XP_012072390.1
description PREDICTED: serine/threonine-protein kinase BRI1-like 2 [Jatropha curcas]
swissprot
ID Q9ZPS9
description Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL2 PE=1 SV=1
trembl
ID A0A067KPQ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04829 PE=4 SV=1
Gene Ontology
ID GO:0005622
description serine threonine-protein kinase bri1-like 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36982: 58321-58573
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003582_030 0.0 - - PREDICTED: serine/threonine-protein kinase BRI1-like 2 [Jatropha curcas]
2 Hb_000098_230 0.073371056 - - Potassium channel AKT2/3, putative [Ricinus communis]
3 Hb_000087_190 0.0746421599 - - hypothetical protein CICLE_v10033278mg [Citrus clementina]
4 Hb_000646_040 0.0828736428 - - PREDICTED: thiamine-repressible mitochondrial transport protein THI74-like [Jatropha curcas]
5 Hb_000030_230 0.0837361838 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
6 Hb_002186_170 0.0945094406 - - hypothetical protein POPTR_0067s00200g [Populus trichocarpa]
7 Hb_000197_260 0.0962048652 - - hypothetical protein PRUPE_ppa025448mg [Prunus persica]
8 Hb_001541_170 0.0963055912 - - hypothetical protein JCGZ_17850 [Jatropha curcas]
9 Hb_002186_110 0.1008289477 - - hypothetical protein CICLE_v10024045mg, partial [Citrus clementina]
10 Hb_007919_010 0.1029781354 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000422_060 0.1037015574 transcription factor TF Family: OFP hypothetical protein RCOM_1282480 [Ricinus communis]
12 Hb_002534_070 0.1061584168 - - PREDICTED: uncharacterized protein LOC105640545 [Jatropha curcas]
13 Hb_009225_070 0.1071997336 - - tonoplast intrinsic protein, putative [Ricinus communis]
14 Hb_000349_280 0.1072102813 - - conserved hypothetical protein [Ricinus communis]
15 Hb_007545_220 0.1082519297 - - PREDICTED: uncharacterized protein LOC105632565 [Jatropha curcas]
16 Hb_010217_020 0.1089945904 - - cinnamate 4-hydroxylase [Leucaena leucocephala]
17 Hb_180980_010 0.1090107576 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Malus domestica]
18 Hb_017700_030 0.1097394495 - - PREDICTED: vacuolar amino acid transporter 1 [Jatropha curcas]
19 Hb_011314_010 0.1102828784 - - PREDICTED: disease resistance protein RPS6-like isoform X1 [Jatropha curcas]
20 Hb_004450_090 0.1116675231 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_003582_030 Hb_003582_030 Hb_000098_230 Hb_000098_230 Hb_003582_030--Hb_000098_230 Hb_000087_190 Hb_000087_190 Hb_003582_030--Hb_000087_190 Hb_000646_040 Hb_000646_040 Hb_003582_030--Hb_000646_040 Hb_000030_230 Hb_000030_230 Hb_003582_030--Hb_000030_230 Hb_002186_170 Hb_002186_170 Hb_003582_030--Hb_002186_170 Hb_000197_260 Hb_000197_260 Hb_003582_030--Hb_000197_260 Hb_001541_170 Hb_001541_170 Hb_000098_230--Hb_001541_170 Hb_007919_010 Hb_007919_010 Hb_000098_230--Hb_007919_010 Hb_001418_050 Hb_001418_050 Hb_000098_230--Hb_001418_050 Hb_000422_060 Hb_000422_060 Hb_000098_230--Hb_000422_060 Hb_007441_100 Hb_007441_100 Hb_000098_230--Hb_007441_100 Hb_000087_190--Hb_000098_230 Hb_000087_190--Hb_001541_170 Hb_000087_190--Hb_000030_230 Hb_000087_190--Hb_000197_260 Hb_000137_050 Hb_000137_050 Hb_000087_190--Hb_000137_050 Hb_000120_560 Hb_000120_560 Hb_000646_040--Hb_000120_560 Hb_002534_070 Hb_002534_070 Hb_000646_040--Hb_002534_070 Hb_000646_040--Hb_007919_010 Hb_000646_040--Hb_002186_170 Hb_000646_040--Hb_000422_060 Hb_000307_060 Hb_000307_060 Hb_000030_230--Hb_000307_060 Hb_000317_170 Hb_000317_170 Hb_000030_230--Hb_000317_170 Hb_000000_260 Hb_000000_260 Hb_000030_230--Hb_000000_260 Hb_002186_110 Hb_002186_110 Hb_000030_230--Hb_002186_110 Hb_000175_370 Hb_000175_370 Hb_002186_170--Hb_000175_370 Hb_002186_170--Hb_000098_230 Hb_002186_170--Hb_000422_060 Hb_002186_170--Hb_001541_170 Hb_005183_070 Hb_005183_070 Hb_000197_260--Hb_005183_070 Hb_152914_010 Hb_152914_010 Hb_000197_260--Hb_152914_010 Hb_029665_010 Hb_029665_010 Hb_000197_260--Hb_029665_010 Hb_001680_050 Hb_001680_050 Hb_000197_260--Hb_001680_050 Hb_000197_260--Hb_002186_110 Hb_007579_030 Hb_007579_030 Hb_000197_260--Hb_007579_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0444269 4.45972 1.77114 16.843 0.0858911 0.0457476
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.00997223 0 0.545445 3.51833

CAGE analysis