Hb_003582_050

Information

Type -
Description -
Location Contig3582: 91946-93064
Sequence    

Annotation

kegg
ID pop:POPTR_0008s13950g
description POPTRDRAFT_874781; hypothetical protein
nr
ID XP_002311553.1
description hypothetical protein POPTR_0008s13950g [Populus trichocarpa]
swissprot
ID Q9FRH3
description Putative clathrin assembly protein At1g25240 OS=Arabidopsis thaliana GN=At1g25240 PE=3 SV=1
trembl
ID B9HJL1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s13950g PE=4 SV=1
Gene Ontology
ID GO:0030136
description clathrin assembly protein at1g25240

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003582_050 0.0 - - hypothetical protein POPTR_0008s13950g [Populus trichocarpa]
2 Hb_002836_030 0.0037871517 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
3 Hb_144813_010 0.0131979601 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
4 Hb_000320_170 0.0193621877 - - conserved hypothetical protein [Ricinus communis]
5 Hb_011888_010 0.0458658192 - - Receptor like protein 46, putative [Theobroma cacao]
6 Hb_071998_010 0.0498336323 - - PREDICTED: uncharacterized protein LOC105800957 [Gossypium raimondii]
7 Hb_034909_010 0.0779775555 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_003410_020 0.0780940866 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
9 Hb_166828_010 0.0946099246 - - -
10 Hb_004566_050 0.0991693826 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_111985_030 0.0995834616 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
12 Hb_002092_140 0.1109727983 - - hypothetical protein EUGRSUZ_B00708, partial [Eucalyptus grandis]
13 Hb_001318_060 0.1161503692 - - contains similarity to reverse transcriptase-like proteins [Arabidopsis thaliana]
14 Hb_010435_010 0.1247456073 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_000300_240 0.1446306554 - - Sodium/potassium/calcium exchanger 6 precursor, putative [Ricinus communis]
16 Hb_004191_030 0.1636463922 - - hypothetical protein POPTR_0013s13140g [Populus trichocarpa]
17 Hb_000002_280 0.1654790534 - - PREDICTED: two-pore potassium channel 1 [Jatropha curcas]
18 Hb_000417_330 0.1690063754 - - -
19 Hb_008576_010 0.1752038309 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_149253_010 0.1793934552 - - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Gossypium arboreum]

Gene co-expression network

sample Hb_003582_050 Hb_003582_050 Hb_002836_030 Hb_002836_030 Hb_003582_050--Hb_002836_030 Hb_144813_010 Hb_144813_010 Hb_003582_050--Hb_144813_010 Hb_000320_170 Hb_000320_170 Hb_003582_050--Hb_000320_170 Hb_011888_010 Hb_011888_010 Hb_003582_050--Hb_011888_010 Hb_071998_010 Hb_071998_010 Hb_003582_050--Hb_071998_010 Hb_034909_010 Hb_034909_010 Hb_003582_050--Hb_034909_010 Hb_002836_030--Hb_000320_170 Hb_002836_030--Hb_144813_010 Hb_002836_030--Hb_011888_010 Hb_002836_030--Hb_071998_010 Hb_002836_030--Hb_034909_010 Hb_144813_010--Hb_000320_170 Hb_144813_010--Hb_011888_010 Hb_144813_010--Hb_071998_010 Hb_144813_010--Hb_034909_010 Hb_000320_170--Hb_011888_010 Hb_000320_170--Hb_071998_010 Hb_166828_010 Hb_166828_010 Hb_000320_170--Hb_166828_010 Hb_011888_010--Hb_071998_010 Hb_011888_010--Hb_034909_010 Hb_003410_020 Hb_003410_020 Hb_011888_010--Hb_003410_020 Hb_071998_010--Hb_034909_010 Hb_071998_010--Hb_003410_020 Hb_004566_050 Hb_004566_050 Hb_071998_010--Hb_004566_050 Hb_034909_010--Hb_003410_020 Hb_034909_010--Hb_004566_050 Hb_111985_030 Hb_111985_030 Hb_034909_010--Hb_111985_030 Hb_001318_060 Hb_001318_060 Hb_034909_010--Hb_001318_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.266891 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.214655

CAGE analysis