Hb_003582_060

Information

Type transcription factor
Description TF Family: BBR-BPC
Location Contig3582: 96760-98540
Sequence    

Annotation

kegg
ID rcu:RCOM_0778050
description hypothetical protein
nr
ID XP_012072387.1
description PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
swissprot
ID Q9SKD0
description Protein BASIC PENTACYSTEINE1 OS=Arabidopsis thaliana GN=BPC1 PE=1 SV=1
trembl
ID A0A067KPQ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04824 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36988: 96770-98947
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003582_060 0.0 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
2 Hb_006615_240 0.0408222791 - - PREDICTED: uncharacterized protein LOC105640673 [Jatropha curcas]
3 Hb_000003_230 0.0434353464 - - PREDICTED: FAD synthetase 2, chloroplastic [Jatropha curcas]
4 Hb_003304_020 0.0551083258 - - Polyadenylate-binding protein RBP47C [Glycine soja]
5 Hb_000221_190 0.055778422 - - PREDICTED: 14-3-3-like protein [Jatropha curcas]
6 Hb_017895_040 0.0577297942 - - hypothetical protein POPTR_0006s08120g [Populus trichocarpa]
7 Hb_001300_150 0.0588883513 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 3 [Jatropha curcas]
8 Hb_006573_190 0.0596368082 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]
9 Hb_001278_100 0.0613971883 - - PREDICTED: probable phosphopantothenoylcysteine decarboxylase [Jatropha curcas]
10 Hb_003052_190 0.0618847934 - - PREDICTED: uncharacterized protein LOC105641937 isoform X2 [Jatropha curcas]
11 Hb_000375_350 0.0631664445 - - PREDICTED: uncharacterized protein LOC105641632 [Jatropha curcas]
12 Hb_000928_070 0.0635659534 - - PREDICTED: maltose excess protein 1, chloroplastic-like [Jatropha curcas]
13 Hb_000390_300 0.0641782362 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase MCC1 [Jatropha curcas]
14 Hb_004058_030 0.0645880248 - - PREDICTED: stomatin-like protein 2, mitochondrial [Jatropha curcas]
15 Hb_012022_040 0.0655386766 - - Protein SIS1, putative [Ricinus communis]
16 Hb_005496_140 0.0660465358 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000460_030 0.0663895253 - - 4-hydroxybenzoate octaprenyltransferase, putative [Ricinus communis]
18 Hb_000599_250 0.0665851174 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]
19 Hb_004109_220 0.0665983285 - - PREDICTED: polyadenylate-binding protein-interacting protein 9-like [Populus euphratica]
20 Hb_004109_170 0.0679463321 - - PREDICTED: probable ribokinase [Jatropha curcas]

Gene co-expression network

sample Hb_003582_060 Hb_003582_060 Hb_006615_240 Hb_006615_240 Hb_003582_060--Hb_006615_240 Hb_000003_230 Hb_000003_230 Hb_003582_060--Hb_000003_230 Hb_003304_020 Hb_003304_020 Hb_003582_060--Hb_003304_020 Hb_000221_190 Hb_000221_190 Hb_003582_060--Hb_000221_190 Hb_017895_040 Hb_017895_040 Hb_003582_060--Hb_017895_040 Hb_001300_150 Hb_001300_150 Hb_003582_060--Hb_001300_150 Hb_010098_050 Hb_010098_050 Hb_006615_240--Hb_010098_050 Hb_000390_300 Hb_000390_300 Hb_006615_240--Hb_000390_300 Hb_004109_170 Hb_004109_170 Hb_006615_240--Hb_004109_170 Hb_006615_240--Hb_000003_230 Hb_001341_150 Hb_001341_150 Hb_006615_240--Hb_001341_150 Hb_007676_080 Hb_007676_080 Hb_000003_230--Hb_007676_080 Hb_000003_230--Hb_003304_020 Hb_006573_190 Hb_006573_190 Hb_000003_230--Hb_006573_190 Hb_004058_030 Hb_004058_030 Hb_000003_230--Hb_004058_030 Hb_003304_020--Hb_004058_030 Hb_003304_020--Hb_007676_080 Hb_003052_190 Hb_003052_190 Hb_003304_020--Hb_003052_190 Hb_002681_100 Hb_002681_100 Hb_003304_020--Hb_002681_100 Hb_012022_040 Hb_012022_040 Hb_000221_190--Hb_012022_040 Hb_000310_020 Hb_000310_020 Hb_000221_190--Hb_000310_020 Hb_000505_130 Hb_000505_130 Hb_000221_190--Hb_000505_130 Hb_000221_190--Hb_006615_240 Hb_001278_100 Hb_001278_100 Hb_000221_190--Hb_001278_100 Hb_000375_350 Hb_000375_350 Hb_017895_040--Hb_000375_350 Hb_005496_140 Hb_005496_140 Hb_017895_040--Hb_005496_140 Hb_024439_010 Hb_024439_010 Hb_017895_040--Hb_024439_010 Hb_013575_010 Hb_013575_010 Hb_017895_040--Hb_013575_010 Hb_002641_060 Hb_002641_060 Hb_017895_040--Hb_002641_060 Hb_000465_160 Hb_000465_160 Hb_001300_150--Hb_000465_160 Hb_001300_150--Hb_000375_350 Hb_000599_250 Hb_000599_250 Hb_001300_150--Hb_000599_250 Hb_027380_130 Hb_027380_130 Hb_001300_150--Hb_027380_130 Hb_000260_030 Hb_000260_030 Hb_001300_150--Hb_000260_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.4064 16.2587 24.8671 25.5078 15.6493 16.601
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.4426 37.9755 27.4367 20.103 19.609

CAGE analysis