Hb_003582_080

Information

Type -
Description -
Location Contig3582: 104894-113755
Sequence    

Annotation

kegg
ID rcu:RCOM_0778070
description iaa-alanine resistance protein, putative
nr
ID XP_002521911.1
description iaa-alanine resistance protein, putative [Ricinus communis]
swissprot
ID Q9M647
description IAA-alanine resistance protein 1 OS=Arabidopsis thaliana GN=IAR1 PE=1 SV=3
trembl
ID B9S7E2
description Iaa-alanine resistance protein, putative OS=Ricinus communis GN=RCOM_0778070 PE=4 SV=1
Gene Ontology
ID GO:0005783
description iaa-alanine resistance protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36992: 104895-113662
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003582_080 0.0 - - iaa-alanine resistance protein, putative [Ricinus communis]
2 Hb_011609_140 0.1076179101 - - hypothetical protein JCGZ_12974 [Jatropha curcas]
3 Hb_001214_060 0.1103756536 - - PREDICTED: phosphoinositide phosphatase SAC8 [Jatropha curcas]
4 Hb_169631_010 0.1137183957 - - MADS-box transcription factor, putative [Ricinus communis]
5 Hb_005730_120 0.1138503844 - - PREDICTED: protein WHI4 [Jatropha curcas]
6 Hb_033834_030 0.1139768378 - - PREDICTED: nucleolar complex protein 2 homolog isoform X1 [Jatropha curcas]
7 Hb_000521_120 0.1154061152 - - PREDICTED: cyclic pyranopterin monophosphate synthase, mitochondrial isoform X1 [Jatropha curcas]
8 Hb_001635_160 0.1204571023 - - hypothetical protein JCGZ_24810 [Jatropha curcas]
9 Hb_003893_030 0.1208371792 - - Protein yrdA, putative [Ricinus communis]
10 Hb_059480_010 0.1212132654 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
11 Hb_000035_110 0.1225601167 - - PREDICTED: transcription initiation factor TFIID subunit 5 [Jatropha curcas]
12 Hb_000005_220 0.1228716403 - - DNA ligase 1, partial [Glycine soja]
13 Hb_001123_030 0.1231418939 - - ABC transporter family protein [Hevea brasiliensis]
14 Hb_001922_170 0.1248615026 - - Plastidic pyruvate kinase beta subunit 1 isoform 2 [Theobroma cacao]
15 Hb_004897_020 0.1255214384 - - PREDICTED: (-)-germacrene D synthase-like [Populus euphratica]
16 Hb_000640_170 0.1255810131 - - PREDICTED: uncharacterized protein LOC105642632 isoform X2 [Jatropha curcas]
17 Hb_003688_130 0.1261199843 - - phosphoserine phosphatase, putative [Ricinus communis]
18 Hb_000245_220 0.126199442 - - PREDICTED: uncharacterized protein LOC105635566 [Jatropha curcas]
19 Hb_032808_010 0.126275085 - - PREDICTED: mitochondrial outer membrane protein porin of 34 kDa [Jatropha curcas]
20 Hb_001357_150 0.1268818791 - - hypothetical protein POPTR_0011s08930g [Populus trichocarpa]

Gene co-expression network

sample Hb_003582_080 Hb_003582_080 Hb_011609_140 Hb_011609_140 Hb_003582_080--Hb_011609_140 Hb_001214_060 Hb_001214_060 Hb_003582_080--Hb_001214_060 Hb_169631_010 Hb_169631_010 Hb_003582_080--Hb_169631_010 Hb_005730_120 Hb_005730_120 Hb_003582_080--Hb_005730_120 Hb_033834_030 Hb_033834_030 Hb_003582_080--Hb_033834_030 Hb_000521_120 Hb_000521_120 Hb_003582_080--Hb_000521_120 Hb_000679_310 Hb_000679_310 Hb_011609_140--Hb_000679_310 Hb_000484_030 Hb_000484_030 Hb_011609_140--Hb_000484_030 Hb_001922_150 Hb_001922_150 Hb_011609_140--Hb_001922_150 Hb_001635_160 Hb_001635_160 Hb_011609_140--Hb_001635_160 Hb_001751_140 Hb_001751_140 Hb_011609_140--Hb_001751_140 Hb_003680_150 Hb_003680_150 Hb_011609_140--Hb_003680_150 Hb_000302_310 Hb_000302_310 Hb_001214_060--Hb_000302_310 Hb_001214_060--Hb_033834_030 Hb_001214_060--Hb_005730_120 Hb_000020_150 Hb_000020_150 Hb_001214_060--Hb_000020_150 Hb_001599_040 Hb_001599_040 Hb_001214_060--Hb_001599_040 Hb_002175_030 Hb_002175_030 Hb_001214_060--Hb_002175_030 Hb_004157_100 Hb_004157_100 Hb_169631_010--Hb_004157_100 Hb_000249_070 Hb_000249_070 Hb_169631_010--Hb_000249_070 Hb_002660_150 Hb_002660_150 Hb_169631_010--Hb_002660_150 Hb_000107_230 Hb_000107_230 Hb_169631_010--Hb_000107_230 Hb_004052_040 Hb_004052_040 Hb_169631_010--Hb_004052_040 Hb_009049_020 Hb_009049_020 Hb_169631_010--Hb_009049_020 Hb_005271_220 Hb_005271_220 Hb_005730_120--Hb_005271_220 Hb_032808_010 Hb_032808_010 Hb_005730_120--Hb_032808_010 Hb_002303_070 Hb_002303_070 Hb_005730_120--Hb_002303_070 Hb_005730_120--Hb_001599_040 Hb_004453_130 Hb_004453_130 Hb_005730_120--Hb_004453_130 Hb_002311_180 Hb_002311_180 Hb_005730_120--Hb_002311_180 Hb_001051_080 Hb_001051_080 Hb_033834_030--Hb_001051_080 Hb_001143_180 Hb_001143_180 Hb_033834_030--Hb_001143_180 Hb_005337_090 Hb_005337_090 Hb_033834_030--Hb_005337_090 Hb_033834_030--Hb_002175_030 Hb_000120_430 Hb_000120_430 Hb_033834_030--Hb_000120_430 Hb_033834_030--Hb_000020_150 Hb_000156_010 Hb_000156_010 Hb_000521_120--Hb_000156_010 Hb_000334_280 Hb_000334_280 Hb_000521_120--Hb_000334_280 Hb_001638_170 Hb_001638_170 Hb_000521_120--Hb_001638_170 Hb_000640_170 Hb_000640_170 Hb_000521_120--Hb_000640_170 Hb_007390_010 Hb_007390_010 Hb_000521_120--Hb_007390_010 Hb_003750_050 Hb_003750_050 Hb_000521_120--Hb_003750_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.0093 10.1245 15.5411 21.398 10.5594 19.1248
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.976 14.704 6.41083 12.4992 13.2637

CAGE analysis