Hb_003582_090

Information

Type -
Description -
Location Contig3582: 115688-122296
Sequence    

Annotation

kegg
ID rcu:RCOM_0778090
description PLE, putative
nr
ID XP_012072381.1
description PREDICTED: 65-kDa microtubule-associated protein 6-like [Jatropha curcas]
swissprot
ID Q9SIS3
description 65-kDa microtubule-associated protein 6 OS=Arabidopsis thaliana GN=MAP65-6 PE=1 SV=1
trembl
ID A0A067KPX1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04820 PE=4 SV=1
Gene Ontology
ID GO:0008017
description 65-kda microtubule-associated protein 6-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36994: 115707-122283 , PASA_asmbl_36995: 115707-121580 , PASA_asmbl_36996: 120978-121243
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003582_090 0.0 - - PREDICTED: 65-kDa microtubule-associated protein 6-like [Jatropha curcas]
2 Hb_000445_370 0.0879747902 - - PREDICTED: probable methyltransferase PMT24 [Jatropha curcas]
3 Hb_002675_080 0.1009036172 - - PREDICTED: uncharacterized protein LOC105634950 [Jatropha curcas]
4 Hb_001195_660 0.1045095862 - - metalloendopeptidase, putative [Ricinus communis]
5 Hb_000042_050 0.1185171156 - - PREDICTED: uncharacterized protein LOC105632791 isoform X1 [Jatropha curcas]
6 Hb_001053_020 0.1195574778 - - carotenoid cleavage dioxygenase 1 [Manihot esculenta]
7 Hb_003847_040 0.1202343544 - - adenosine diphosphatase, putative [Ricinus communis]
8 Hb_005914_210 0.1230881557 - - PREDICTED: uncharacterized protein LOC105638411 [Jatropha curcas]
9 Hb_002026_030 0.1259064332 desease resistance Gene Name: NB-ARC PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
10 Hb_003006_090 0.1291990608 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming] isoform X2 [Jatropha curcas]
11 Hb_001109_160 0.1319976131 - - DNA binding protein, putative [Ricinus communis]
12 Hb_001677_040 0.1323281584 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
13 Hb_006916_030 0.1339743199 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
14 Hb_000466_070 0.1365145225 - - hypothetical protein JCGZ_08989 [Jatropha curcas]
15 Hb_000099_170 0.1367319083 - - PREDICTED: uncharacterized protein LOC105645733 [Jatropha curcas]
16 Hb_048476_030 0.1385738491 - - hypothetical protein POPTR_0010s11560g [Populus trichocarpa]
17 Hb_000414_080 0.138770931 - - PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]
18 Hb_003175_070 0.1394128529 - - pyrophosphate-dependent phosphofructokinase, partial [Hevea brasiliensis]
19 Hb_005977_060 0.1396528733 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000959_300 0.1417061886 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming] isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_003582_090 Hb_003582_090 Hb_000445_370 Hb_000445_370 Hb_003582_090--Hb_000445_370 Hb_002675_080 Hb_002675_080 Hb_003582_090--Hb_002675_080 Hb_001195_660 Hb_001195_660 Hb_003582_090--Hb_001195_660 Hb_000042_050 Hb_000042_050 Hb_003582_090--Hb_000042_050 Hb_001053_020 Hb_001053_020 Hb_003582_090--Hb_001053_020 Hb_003847_040 Hb_003847_040 Hb_003582_090--Hb_003847_040 Hb_035834_010 Hb_035834_010 Hb_000445_370--Hb_035834_010 Hb_006916_030 Hb_006916_030 Hb_000445_370--Hb_006916_030 Hb_000066_040 Hb_000066_040 Hb_000445_370--Hb_000066_040 Hb_000167_040 Hb_000167_040 Hb_000445_370--Hb_000167_040 Hb_009193_010 Hb_009193_010 Hb_000445_370--Hb_009193_010 Hb_002675_080--Hb_000042_050 Hb_000099_170 Hb_000099_170 Hb_002675_080--Hb_000099_170 Hb_003849_160 Hb_003849_160 Hb_002675_080--Hb_003849_160 Hb_003175_070 Hb_003175_070 Hb_002675_080--Hb_003175_070 Hb_002026_030 Hb_002026_030 Hb_002675_080--Hb_002026_030 Hb_001195_660--Hb_003847_040 Hb_026549_070 Hb_026549_070 Hb_001195_660--Hb_026549_070 Hb_000283_140 Hb_000283_140 Hb_001195_660--Hb_000283_140 Hb_009079_050 Hb_009079_050 Hb_001195_660--Hb_009079_050 Hb_000139_300 Hb_000139_300 Hb_001195_660--Hb_000139_300 Hb_000042_050--Hb_001053_020 Hb_007765_130 Hb_007765_130 Hb_000042_050--Hb_007765_130 Hb_000042_050--Hb_000099_170 Hb_000042_050--Hb_003175_070 Hb_000042_050--Hb_003849_160 Hb_004242_170 Hb_004242_170 Hb_001053_020--Hb_004242_170 Hb_000441_050 Hb_000441_050 Hb_001053_020--Hb_000441_050 Hb_000976_130 Hb_000976_130 Hb_001053_020--Hb_000976_130 Hb_001252_030 Hb_001252_030 Hb_001053_020--Hb_001252_030 Hb_009692_040 Hb_009692_040 Hb_001053_020--Hb_009692_040 Hb_000638_060 Hb_000638_060 Hb_003847_040--Hb_000638_060 Hb_001411_130 Hb_001411_130 Hb_003847_040--Hb_001411_130 Hb_003847_040--Hb_026549_070 Hb_000959_300 Hb_000959_300 Hb_003847_040--Hb_000959_300 Hb_000414_080 Hb_000414_080 Hb_003847_040--Hb_000414_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.90554 17.3387 31.5203 39.5198 7.53926 4.50697
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.68556 0.512309 7.75165 10.1005 52.2751

CAGE analysis