Hb_003583_010

Information

Type -
Description -
Location Contig3583: 11508-13734
Sequence    

Annotation

kegg
ID pop:POPTR_0012s14940g
description POPTRDRAFT_570624; hypothetical protein
nr
ID XP_012080791.1
description PREDICTED: patatin-like protein 6 [Jatropha curcas]
swissprot
ID Q9SV43
description Patatin-like protein 7 OS=Arabidopsis thaliana GN=PLP7 PE=2 SV=1
trembl
ID A0A067KFS3
description Patatin OS=Jatropha curcas GN=JCGZ_15549 PE=3 SV=1
Gene Ontology
ID GO:0016787
description patatin-like protein 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36999: 11414-13544
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003583_010 0.0 - - PREDICTED: patatin-like protein 6 [Jatropha curcas]
2 Hb_000959_320 0.1290192727 - - PREDICTED: uncharacterized protein LOC105778325 [Gossypium raimondii]
3 Hb_000130_460 0.133358401 - - hypothetical protein JCGZ_15296 [Jatropha curcas]
4 Hb_000190_170 0.1360913908 - - PREDICTED: chlorophyllase-1-like [Jatropha curcas]
5 Hb_000003_210 0.1407437051 - - PREDICTED: GEM-like protein 4 [Jatropha curcas]
6 Hb_000140_320 0.1425621394 - - delta-8 sphingolipid desaturase [Vernicia fordii]
7 Hb_007625_010 0.1434510946 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004079_070 0.1479581454 - - hypothetical protein JCGZ_07230 [Jatropha curcas]
9 Hb_000417_090 0.1490256956 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
10 Hb_005181_140 0.1526953651 - - hypothetical protein JCGZ_19000 [Jatropha curcas]
11 Hb_000816_140 0.1547370009 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
12 Hb_000815_050 0.1554409527 - - PREDICTED: expansin-A1 [Populus euphratica]
13 Hb_001956_130 0.1560134167 - - catalytic, putative [Ricinus communis]
14 Hb_012653_050 0.1597708426 - - hypothetical protein RCOM_0460020 [Ricinus communis]
15 Hb_000579_110 0.1605921632 - - PREDICTED: transmembrane protein 136 [Jatropha curcas]
16 Hb_003376_020 0.1620127942 - - PREDICTED: interactor of constitutive active ROPs 2, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_001159_230 0.1621248564 - - Kinesin heavy chain, putative [Ricinus communis]
18 Hb_007811_020 0.1626151981 - - PREDICTED: expansin-A6 [Jatropha curcas]
19 Hb_010883_170 0.1633695265 - - PREDICTED: auxin transporter-like protein 3 [Jatropha curcas]
20 Hb_004202_020 0.1638503841 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003583_010 Hb_003583_010 Hb_000959_320 Hb_000959_320 Hb_003583_010--Hb_000959_320 Hb_000130_460 Hb_000130_460 Hb_003583_010--Hb_000130_460 Hb_000190_170 Hb_000190_170 Hb_003583_010--Hb_000190_170 Hb_000003_210 Hb_000003_210 Hb_003583_010--Hb_000003_210 Hb_000140_320 Hb_000140_320 Hb_003583_010--Hb_000140_320 Hb_007625_010 Hb_007625_010 Hb_003583_010--Hb_007625_010 Hb_003050_020 Hb_003050_020 Hb_000959_320--Hb_003050_020 Hb_000907_160 Hb_000907_160 Hb_000959_320--Hb_000907_160 Hb_000920_230 Hb_000920_230 Hb_000959_320--Hb_000920_230 Hb_000103_070 Hb_000103_070 Hb_000959_320--Hb_000103_070 Hb_000959_320--Hb_000003_210 Hb_003894_110 Hb_003894_110 Hb_000130_460--Hb_003894_110 Hb_009486_050 Hb_009486_050 Hb_000130_460--Hb_009486_050 Hb_001021_120 Hb_001021_120 Hb_000130_460--Hb_001021_120 Hb_152910_050 Hb_152910_050 Hb_000130_460--Hb_152910_050 Hb_017434_010 Hb_017434_010 Hb_000130_460--Hb_017434_010 Hb_003376_020 Hb_003376_020 Hb_000130_460--Hb_003376_020 Hb_002411_090 Hb_002411_090 Hb_000190_170--Hb_002411_090 Hb_039222_010 Hb_039222_010 Hb_000190_170--Hb_039222_010 Hb_001544_090 Hb_001544_090 Hb_000190_170--Hb_001544_090 Hb_007811_020 Hb_007811_020 Hb_000190_170--Hb_007811_020 Hb_004117_090 Hb_004117_090 Hb_000190_170--Hb_004117_090 Hb_001095_020 Hb_001095_020 Hb_000190_170--Hb_001095_020 Hb_132840_150 Hb_132840_150 Hb_000003_210--Hb_132840_150 Hb_005253_020 Hb_005253_020 Hb_000003_210--Hb_005253_020 Hb_000003_210--Hb_000190_170 Hb_001159_230 Hb_001159_230 Hb_000003_210--Hb_001159_230 Hb_000003_210--Hb_007811_020 Hb_000103_450 Hb_000103_450 Hb_000140_320--Hb_000103_450 Hb_010883_170 Hb_010883_170 Hb_000140_320--Hb_010883_170 Hb_001047_090 Hb_001047_090 Hb_000140_320--Hb_001047_090 Hb_002311_030 Hb_002311_030 Hb_000140_320--Hb_002311_030 Hb_006922_120 Hb_006922_120 Hb_000140_320--Hb_006922_120 Hb_053264_010 Hb_053264_010 Hb_000140_320--Hb_053264_010 Hb_001956_130 Hb_001956_130 Hb_007625_010--Hb_001956_130 Hb_006816_380 Hb_006816_380 Hb_007625_010--Hb_006816_380 Hb_000915_170 Hb_000915_170 Hb_007625_010--Hb_000915_170 Hb_002200_030 Hb_002200_030 Hb_007625_010--Hb_002200_030 Hb_000103_200 Hb_000103_200 Hb_007625_010--Hb_000103_200 Hb_000816_140 Hb_000816_140 Hb_007625_010--Hb_000816_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0879123 0.608752 14.7093 26.7625 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.308736 1.96743 0.410867 0.261737 11.8446

CAGE analysis