Hb_003589_090

Information

Type -
Description -
Location Contig3589: 71960-79188
Sequence    

Annotation

kegg
ID rcu:RCOM_0689490
description Potassium transporter, putative
nr
ID XP_012091163.1
description PREDICTED: potassium transporter 2 [Jatropha curcas]
swissprot
ID O22881
description Potassium transporter 2 OS=Arabidopsis thaliana GN=POT2 PE=1 SV=2
trembl
ID A0A067JFV5
description Potassium transporter OS=Jatropha curcas GN=JCGZ_03339 PE=3 SV=1
Gene Ontology
ID GO:0016020
description potassium transporter 2-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37005: 72091-77203 , PASA_asmbl_37006: 76657-77295
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003589_090 0.0 - - PREDICTED: potassium transporter 2 [Jatropha curcas]
2 Hb_033642_110 0.1046567598 - - PREDICTED: MLO-like protein 4 [Jatropha curcas]
3 Hb_009838_100 0.1125793354 - - hypothetical protein RCOM_1217340 [Ricinus communis]
4 Hb_021409_020 0.1134157127 - - PREDICTED: protein yippee-like At4g27745 [Malus domestica]
5 Hb_000331_210 0.1162399331 - - PREDICTED: probable aspartyl aminopeptidase [Jatropha curcas]
6 Hb_145314_010 0.1226406444 - - PREDICTED: COP9 signalosome complex subunit 5b-like [Jatropha curcas]
7 Hb_010172_080 0.122993421 - - acetylglucosaminyltransferase, putative [Ricinus communis]
8 Hb_000009_170 0.1235729133 - - dolichyl-diphosphooligosaccharide--protein glycosyltransferase, putative [Ricinus communis]
9 Hb_007594_030 0.1246514142 - - PREDICTED: cucumber peeling cupredoxin-like [Jatropha curcas]
10 Hb_000179_130 0.1266754607 - - PREDICTED: protein Brevis radix-like 4 [Jatropha curcas]
11 Hb_116349_160 0.1319774466 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
12 Hb_001006_170 0.1335098158 - - Endonuclease V, putative [Ricinus communis]
13 Hb_002759_280 0.1339853058 - - PREDICTED: uncharacterized protein LOC105649824 [Jatropha curcas]
14 Hb_003376_360 0.1366702703 - - PREDICTED: ubiquitin-like protein 5 [Nelumbo nucifera]
15 Hb_002196_020 0.1377606433 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_039837_010 0.140175932 - - PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
17 Hb_001960_020 0.1402509518 - - PREDICTED: mitochondrial arginine transporter BAC2 [Jatropha curcas]
18 Hb_033843_010 0.1417894133 - - PREDICTED: cell division control protein 2 homolog A isoform X1 [Jatropha curcas]
19 Hb_000083_250 0.1424089232 - - ring finger protein, putative [Ricinus communis]
20 Hb_003502_080 0.1426181112 - - vacuolar protein sorting, putative [Ricinus communis]

Gene co-expression network

sample Hb_003589_090 Hb_003589_090 Hb_033642_110 Hb_033642_110 Hb_003589_090--Hb_033642_110 Hb_009838_100 Hb_009838_100 Hb_003589_090--Hb_009838_100 Hb_021409_020 Hb_021409_020 Hb_003589_090--Hb_021409_020 Hb_000331_210 Hb_000331_210 Hb_003589_090--Hb_000331_210 Hb_145314_010 Hb_145314_010 Hb_003589_090--Hb_145314_010 Hb_010172_080 Hb_010172_080 Hb_003589_090--Hb_010172_080 Hb_002217_310 Hb_002217_310 Hb_033642_110--Hb_002217_310 Hb_001090_040 Hb_001090_040 Hb_033642_110--Hb_001090_040 Hb_033642_110--Hb_021409_020 Hb_000849_070 Hb_000849_070 Hb_033642_110--Hb_000849_070 Hb_018790_030 Hb_018790_030 Hb_033642_110--Hb_018790_030 Hb_009838_100--Hb_000331_210 Hb_000179_130 Hb_000179_130 Hb_009838_100--Hb_000179_130 Hb_000009_170 Hb_000009_170 Hb_009838_100--Hb_000009_170 Hb_000062_240 Hb_000062_240 Hb_009838_100--Hb_000062_240 Hb_082609_020 Hb_082609_020 Hb_009838_100--Hb_082609_020 Hb_000418_100 Hb_000418_100 Hb_009838_100--Hb_000418_100 Hb_000229_040 Hb_000229_040 Hb_021409_020--Hb_000229_040 Hb_002811_360 Hb_002811_360 Hb_021409_020--Hb_002811_360 Hb_003502_080 Hb_003502_080 Hb_021409_020--Hb_003502_080 Hb_000045_090 Hb_000045_090 Hb_021409_020--Hb_000045_090 Hb_021409_020--Hb_002217_310 Hb_003195_060 Hb_003195_060 Hb_021409_020--Hb_003195_060 Hb_000331_210--Hb_000009_170 Hb_000331_210--Hb_000179_130 Hb_030116_020 Hb_030116_020 Hb_000331_210--Hb_030116_020 Hb_039837_010 Hb_039837_010 Hb_000331_210--Hb_039837_010 Hb_000331_210--Hb_002811_360 Hb_001454_130 Hb_001454_130 Hb_145314_010--Hb_001454_130 Hb_000205_300 Hb_000205_300 Hb_145314_010--Hb_000205_300 Hb_011671_240 Hb_011671_240 Hb_145314_010--Hb_011671_240 Hb_106724_020 Hb_106724_020 Hb_145314_010--Hb_106724_020 Hb_000120_060 Hb_000120_060 Hb_145314_010--Hb_000120_060 Hb_003693_070 Hb_003693_070 Hb_145314_010--Hb_003693_070 Hb_002774_060 Hb_002774_060 Hb_010172_080--Hb_002774_060 Hb_005686_060 Hb_005686_060 Hb_010172_080--Hb_005686_060 Hb_009773_020 Hb_009773_020 Hb_010172_080--Hb_009773_020 Hb_002078_150 Hb_002078_150 Hb_010172_080--Hb_002078_150 Hb_004705_100 Hb_004705_100 Hb_010172_080--Hb_004705_100 Hb_004324_310 Hb_004324_310 Hb_010172_080--Hb_004324_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.7945 3.64628 3.92144 13.9303 14.5705 13.4588
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.86703 9.33076 13.3891 10.5462 1.25464

CAGE analysis