Hb_003592_030

Information

Type -
Description -
Location Contig3592: 25693-26870
Sequence    

Annotation

kegg
ID rcu:RCOM_0317560
description hypothetical protein
nr
ID XP_012085003.1
description PREDICTED: dCTP pyrophosphatase 1-like [Jatropha curcas]
swissprot
ID Q91VC0
description dCTP pyrophosphatase 1 OS=Rattus norvegicus GN=Dctpp1 PE=2 SV=1
trembl
ID A0A067LA55
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15122 PE=4 SV=1
Gene Ontology
ID GO:0016787
description dctp pyrophosphatase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37074: 25398-26803
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003592_030 0.0 - - PREDICTED: dCTP pyrophosphatase 1-like [Jatropha curcas]
2 Hb_002835_340 0.1668885184 - - PREDICTED: peroxisomal primary amine oxidase [Jatropha curcas]
3 Hb_000116_590 0.1807726397 - - PREDICTED: splicing factor, suppressor of white-apricot homolog [Malus domestica]
4 Hb_030982_060 0.1990961754 - - conserved hypothetical protein [Ricinus communis]
5 Hb_009736_010 0.2064206468 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001439_110 0.20818704 transcription factor TF Family: ERF PREDICTED: uncharacterized protein LOC105133481 [Populus euphratica]
7 Hb_004724_450 0.2130101784 - - PREDICTED: uncharacterized protein LOC105647069 isoform X1 [Jatropha curcas]
8 Hb_002471_260 0.2167202161 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105634154 [Jatropha curcas]
9 Hb_002539_010 0.2172888593 - - hypothetical protein JCGZ_15711 [Jatropha curcas]
10 Hb_002835_350 0.219517574 - - PREDICTED: uncharacterized protein LOC105640319 [Jatropha curcas]
11 Hb_011633_040 0.2198816152 - - PREDICTED: receptor-like serine/threonine-protein kinase SD1-8 [Jatropha curcas]
12 Hb_029921_030 0.2225761111 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001287_060 0.2260941986 transcription factor TF Family: Orphans Salt-tolerance protein, putative [Ricinus communis]
14 Hb_006538_190 0.2273739432 - - PREDICTED: homocysteine S-methyltransferase 1 isoform X1 [Jatropha curcas]
15 Hb_000110_290 0.2281420956 - - conserved hypothetical protein [Ricinus communis]
16 Hb_009545_020 0.2284295905 - - PREDICTED: uncharacterized protein LOC105632008 [Jatropha curcas]
17 Hb_001975_040 0.2315335984 rubber biosynthesis Gene Name: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase [Hevea brasiliensis]
18 Hb_074506_010 0.2403318425 - - JHL25H03.10 [Jatropha curcas]
19 Hb_002539_020 0.2412092442 - - hypothetical protein CISIN_1g007216mg [Citrus sinensis]
20 Hb_000189_590 0.2415756857 - - PREDICTED: cysteine synthase [Jatropha curcas]

Gene co-expression network

sample Hb_003592_030 Hb_003592_030 Hb_002835_340 Hb_002835_340 Hb_003592_030--Hb_002835_340 Hb_000116_590 Hb_000116_590 Hb_003592_030--Hb_000116_590 Hb_030982_060 Hb_030982_060 Hb_003592_030--Hb_030982_060 Hb_009736_010 Hb_009736_010 Hb_003592_030--Hb_009736_010 Hb_001439_110 Hb_001439_110 Hb_003592_030--Hb_001439_110 Hb_004724_450 Hb_004724_450 Hb_003592_030--Hb_004724_450 Hb_001975_040 Hb_001975_040 Hb_002835_340--Hb_001975_040 Hb_000317_420 Hb_000317_420 Hb_002835_340--Hb_000317_420 Hb_002539_040 Hb_002539_040 Hb_002835_340--Hb_002539_040 Hb_012807_130 Hb_012807_130 Hb_002835_340--Hb_012807_130 Hb_002660_120 Hb_002660_120 Hb_002835_340--Hb_002660_120 Hb_000421_270 Hb_000421_270 Hb_000116_590--Hb_000421_270 Hb_002025_350 Hb_002025_350 Hb_000116_590--Hb_002025_350 Hb_002835_350 Hb_002835_350 Hb_000116_590--Hb_002835_350 Hb_001405_150 Hb_001405_150 Hb_000116_590--Hb_001405_150 Hb_032631_050 Hb_032631_050 Hb_000116_590--Hb_032631_050 Hb_011947_020 Hb_011947_020 Hb_030982_060--Hb_011947_020 Hb_032225_030 Hb_032225_030 Hb_030982_060--Hb_032225_030 Hb_030982_060--Hb_001439_110 Hb_000922_010 Hb_000922_010 Hb_030982_060--Hb_000922_010 Hb_000189_590 Hb_000189_590 Hb_030982_060--Hb_000189_590 Hb_009545_020 Hb_009545_020 Hb_009736_010--Hb_009545_020 Hb_004195_090 Hb_004195_090 Hb_009736_010--Hb_004195_090 Hb_031527_060 Hb_031527_060 Hb_009736_010--Hb_031527_060 Hb_001170_010 Hb_001170_010 Hb_009736_010--Hb_001170_010 Hb_009736_010--Hb_004724_450 Hb_124315_030 Hb_124315_030 Hb_009736_010--Hb_124315_030 Hb_003226_120 Hb_003226_120 Hb_001439_110--Hb_003226_120 Hb_138710_010 Hb_138710_010 Hb_001439_110--Hb_138710_010 Hb_001439_110--Hb_000189_590 Hb_001390_030 Hb_001390_030 Hb_001439_110--Hb_001390_030 Hb_004724_450--Hb_002835_340 Hb_000110_380 Hb_000110_380 Hb_004724_450--Hb_000110_380 Hb_005408_070 Hb_005408_070 Hb_004724_450--Hb_005408_070 Hb_004724_450--Hb_001170_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0560785 5.07819 2.06478 11.8068 0.052745 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.75511 8.96726 1.05065 20.6695 4.832

CAGE analysis