Hb_003592_070

Information

Type -
Description -
Location Contig3592: 60588-63564
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003592_070 0.0 - - -
2 Hb_000032_350 0.1665337755 - - conserved hypothetical protein [Ricinus communis]
3 Hb_032660_020 0.1709504292 - - PREDICTED: F-box protein At5g49610-like [Jatropha curcas]
4 Hb_000329_660 0.171343299 - - PREDICTED: carotenoid cleavage dioxygenase 7, chloroplastic [Jatropha curcas]
5 Hb_001101_010 0.1836789838 - - hypothetical protein POPTR_0004s18730g [Populus trichocarpa]
6 Hb_004129_150 0.1910911199 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-4a-like [Jatropha curcas]
7 Hb_003050_070 0.1920886415 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000714_010 0.1968149933 - - PREDICTED: salt stress-induced hydrophobic peptide ESI3 [Vitis vinifera]
9 Hb_003376_210 0.200369117 - - -
10 Hb_000387_060 0.2016805926 - - -
11 Hb_001143_010 0.2042365371 - - -
12 Hb_002492_020 0.2063790419 - - PREDICTED: uncharacterized protein LOC104789613 [Camelina sativa]
13 Hb_002918_300 0.207668342 - - -
14 Hb_007943_140 0.2078287139 - - PREDICTED: uncharacterized protein LOC103340977 [Prunus mume]
15 Hb_008705_090 0.2082415031 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-2-like [Jatropha curcas]
16 Hb_007741_040 0.208351574 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105643153 [Jatropha curcas]
17 Hb_003211_050 0.2087906041 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
18 Hb_002471_160 0.2103544921 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 4-like [Populus euphratica]
19 Hb_000453_210 0.2140779701 - - hypothetical protein PHAVU_006G019800g [Phaseolus vulgaris]
20 Hb_168711_010 0.2176596971 - - PREDICTED: (DL)-glycerol-3-phosphatase 2 [Sesamum indicum]

Gene co-expression network

sample Hb_003592_070 Hb_003592_070 Hb_000032_350 Hb_000032_350 Hb_003592_070--Hb_000032_350 Hb_032660_020 Hb_032660_020 Hb_003592_070--Hb_032660_020 Hb_000329_660 Hb_000329_660 Hb_003592_070--Hb_000329_660 Hb_001101_010 Hb_001101_010 Hb_003592_070--Hb_001101_010 Hb_004129_150 Hb_004129_150 Hb_003592_070--Hb_004129_150 Hb_003050_070 Hb_003050_070 Hb_003592_070--Hb_003050_070 Hb_000696_220 Hb_000696_220 Hb_000032_350--Hb_000696_220 Hb_000853_240 Hb_000853_240 Hb_000032_350--Hb_000853_240 Hb_000963_030 Hb_000963_030 Hb_000032_350--Hb_000963_030 Hb_003198_010 Hb_003198_010 Hb_000032_350--Hb_003198_010 Hb_007943_140 Hb_007943_140 Hb_000032_350--Hb_007943_140 Hb_011689_050 Hb_011689_050 Hb_000032_350--Hb_011689_050 Hb_000387_060 Hb_000387_060 Hb_032660_020--Hb_000387_060 Hb_000714_010 Hb_000714_010 Hb_032660_020--Hb_000714_010 Hb_032660_020--Hb_001101_010 Hb_002918_300 Hb_002918_300 Hb_032660_020--Hb_002918_300 Hb_032660_020--Hb_003050_070 Hb_003211_050 Hb_003211_050 Hb_000329_660--Hb_003211_050 Hb_001373_100 Hb_001373_100 Hb_000329_660--Hb_001373_100 Hb_000329_660--Hb_000387_060 Hb_000300_210 Hb_000300_210 Hb_000329_660--Hb_000300_210 Hb_003226_240 Hb_003226_240 Hb_000329_660--Hb_003226_240 Hb_001276_060 Hb_001276_060 Hb_000329_660--Hb_001276_060 Hb_001101_010--Hb_002918_300 Hb_001101_010--Hb_000032_350 Hb_001007_050 Hb_001007_050 Hb_001101_010--Hb_001007_050 Hb_001425_110 Hb_001425_110 Hb_001101_010--Hb_001425_110 Hb_010172_100 Hb_010172_100 Hb_001101_010--Hb_010172_100 Hb_000175_130 Hb_000175_130 Hb_004129_150--Hb_000175_130 Hb_000094_110 Hb_000094_110 Hb_004129_150--Hb_000094_110 Hb_006738_010 Hb_006738_010 Hb_004129_150--Hb_006738_010 Hb_033772_050 Hb_033772_050 Hb_004129_150--Hb_033772_050 Hb_004129_150--Hb_000032_350 Hb_004129_150--Hb_007943_140 Hb_003050_070--Hb_000714_010 Hb_003050_070--Hb_003211_050 Hb_000567_280 Hb_000567_280 Hb_003050_070--Hb_000567_280 Hb_104010_010 Hb_104010_010 Hb_003050_070--Hb_104010_010 Hb_010166_020 Hb_010166_020 Hb_003050_070--Hb_010166_020 Hb_149683_010 Hb_149683_010 Hb_003050_070--Hb_149683_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.24075 0.864015 0.148227 0.075476 0.550644 0.239439
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.57578 5.76312 1.15817 0.289054 0

CAGE analysis