Hb_003599_030

Information

Type -
Description -
Location Contig3599: 19024-25202
Sequence    

Annotation

kegg
ID pop:POPTR_0001s04360g
description POPTRDRAFT_547619; hypothetical protein
nr
ID XP_012067108.1
description PREDICTED: glucan endo-1,3-beta-glucosidase 4 isoform X3 [Jatropha curcas]
swissprot
ID Q94CD8
description Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis thaliana GN=At3g13560 PE=1 SV=1
trembl
ID A0A067L109
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01900 PE=3 SV=1
Gene Ontology
ID GO:0046658
description glucan endo- -beta-glucosidase 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37089: 22012-25340
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003599_030 0.0 - - PREDICTED: glucan endo-1,3-beta-glucosidase 4 isoform X3 [Jatropha curcas]
2 Hb_000705_180 0.0670440061 - - hypothetical protein JCGZ_02923 [Jatropha curcas]
3 Hb_000671_080 0.0754847704 - - PREDICTED: 5'-adenylylsulfate reductase-like 4 [Jatropha curcas]
4 Hb_001257_100 0.0838011052 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FB isoform X1 [Jatropha curcas]
5 Hb_001329_200 0.0876416345 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 1 [Jatropha curcas]
6 Hb_009372_020 0.0903655353 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
7 Hb_009615_160 0.0922564894 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
8 Hb_001328_080 0.0934512468 - - PREDICTED: importin subunit alpha-1b [Jatropha curcas]
9 Hb_000912_100 0.0977791304 - - PREDICTED: CMP-sialic acid transporter 3-like isoform X2 [Elaeis guineensis]
10 Hb_004128_030 0.0980379468 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 8-like isoform X1 [Jatropha curcas]
11 Hb_002915_060 0.0981607702 - - PREDICTED: serine/threonine-protein kinase CTR1-like [Jatropha curcas]
12 Hb_000802_090 0.0987462178 - - ornithine aminotransferase, putative [Ricinus communis]
13 Hb_003849_220 0.0998129707 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like [Jatropha curcas]
14 Hb_000340_080 0.1000292859 - - PREDICTED: isoamylase 2, chloroplastic [Jatropha curcas]
15 Hb_001675_320 0.1003752267 - - PREDICTED: uncharacterized protein LOC105635025 [Jatropha curcas]
16 Hb_024650_080 0.1016038094 - - PREDICTED: BTB/POZ domain-containing protein At3g09030 [Jatropha curcas]
17 Hb_022425_060 0.1027043349 - - PREDICTED: protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein isoform X1 [Jatropha curcas]
18 Hb_001259_120 0.1030099373 - - hypothetical protein EUGRSUZ_C043222, partial [Eucalyptus grandis]
19 Hb_004375_110 0.1033616997 - - PREDICTED: probable ATP-dependent RNA helicase DHX37 [Jatropha curcas]
20 Hb_017948_030 0.1052161815 - - PREDICTED: uncharacterized protein LOC105639493 [Jatropha curcas]

Gene co-expression network

sample Hb_003599_030 Hb_003599_030 Hb_000705_180 Hb_000705_180 Hb_003599_030--Hb_000705_180 Hb_000671_080 Hb_000671_080 Hb_003599_030--Hb_000671_080 Hb_001257_100 Hb_001257_100 Hb_003599_030--Hb_001257_100 Hb_001329_200 Hb_001329_200 Hb_003599_030--Hb_001329_200 Hb_009372_020 Hb_009372_020 Hb_003599_030--Hb_009372_020 Hb_009615_160 Hb_009615_160 Hb_003599_030--Hb_009615_160 Hb_000705_180--Hb_009372_020 Hb_004375_110 Hb_004375_110 Hb_000705_180--Hb_004375_110 Hb_001103_090 Hb_001103_090 Hb_000705_180--Hb_001103_090 Hb_001259_120 Hb_001259_120 Hb_000705_180--Hb_001259_120 Hb_028077_020 Hb_028077_020 Hb_000705_180--Hb_028077_020 Hb_000671_080--Hb_001257_100 Hb_024650_080 Hb_024650_080 Hb_000671_080--Hb_024650_080 Hb_000418_010 Hb_000418_010 Hb_000671_080--Hb_000418_010 Hb_003849_220 Hb_003849_220 Hb_000671_080--Hb_003849_220 Hb_000926_150 Hb_000926_150 Hb_000671_080--Hb_000926_150 Hb_001257_100--Hb_000926_150 Hb_026198_060 Hb_026198_060 Hb_001257_100--Hb_026198_060 Hb_002812_010 Hb_002812_010 Hb_001257_100--Hb_002812_010 Hb_000649_250 Hb_000649_250 Hb_001257_100--Hb_000649_250 Hb_002119_090 Hb_002119_090 Hb_001257_100--Hb_002119_090 Hb_001329_200--Hb_009615_160 Hb_007839_020 Hb_007839_020 Hb_001329_200--Hb_007839_020 Hb_022425_060 Hb_022425_060 Hb_001329_200--Hb_022425_060 Hb_000802_090 Hb_000802_090 Hb_001329_200--Hb_000802_090 Hb_011360_050 Hb_011360_050 Hb_001329_200--Hb_011360_050 Hb_001328_080 Hb_001328_080 Hb_001329_200--Hb_001328_080 Hb_009372_020--Hb_004375_110 Hb_060094_010 Hb_060094_010 Hb_009372_020--Hb_060094_010 Hb_010068_070 Hb_010068_070 Hb_009372_020--Hb_010068_070 Hb_000111_370 Hb_000111_370 Hb_009372_020--Hb_000111_370 Hb_008165_020 Hb_008165_020 Hb_009372_020--Hb_008165_020 Hb_003964_110 Hb_003964_110 Hb_009372_020--Hb_003964_110 Hb_016172_030 Hb_016172_030 Hb_009615_160--Hb_016172_030 Hb_021165_010 Hb_021165_010 Hb_009615_160--Hb_021165_010 Hb_005074_020 Hb_005074_020 Hb_009615_160--Hb_005074_020 Hb_060980_010 Hb_060980_010 Hb_009615_160--Hb_060980_010 Hb_009615_160--Hb_024650_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.866829 4.22259 2.07554 4.14717 1.55327 0.963481
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.14515 0.981086 1.13553 2.28867 1.81337

CAGE analysis