Hb_003599_040

Information

Type -
Description -
Location Contig3599: 27327-31452
Sequence    

Annotation

kegg
ID vvi:100263951
description serine/arginine-rich SC35-like splicing factor SCL30A
nr
ID CBI16510.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q9LHP2
description Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana GN=SCL30A PE=1 SV=1
trembl
ID F6GUK3
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g00710 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37090: 27377-31403 , PASA_asmbl_37091: 28372-31312 , PASA_asmbl_37092: 27644-27923
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003599_040 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_002284_240 0.0449828297 - - PREDICTED: coiled-coil domain-containing protein 115 isoform X3 [Jatropha curcas]
3 Hb_159809_020 0.0507787122 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_000926_300 0.0548897076 - - PREDICTED: small ubiquitin-related modifier 1 [Jatropha curcas]
5 Hb_002685_190 0.0577659404 transcription factor TF Family: SET PREDICTED: probable zinc metalloprotease EGY1, chloroplastic [Jatropha curcas]
6 Hb_000327_190 0.0584704405 - - PREDICTED: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2-like [Jatropha curcas]
7 Hb_000007_100 0.0652658367 - - PREDICTED: uncharacterized protein LOC105640717 [Jatropha curcas]
8 Hb_001421_060 0.0664073887 - - PREDICTED: tobamovirus multiplication protein 2B isoform X2 [Jatropha curcas]
9 Hb_002963_010 0.0668123893 - - PREDICTED: autophagy-related protein 18b-like isoform X1 [Jatropha curcas]
10 Hb_001006_190 0.0685204851 - - PREDICTED: uncharacterized protein LOC105634201 [Jatropha curcas]
11 Hb_000020_060 0.0691294921 - - PREDICTED: trafficking protein particle complex subunit 4 [Jatropha curcas]
12 Hb_000926_250 0.0697399845 - - hypothetical protein POPTR_0011s08930g [Populus trichocarpa]
13 Hb_000103_090 0.06993392 - - PREDICTED: protein RDM1 [Jatropha curcas]
14 Hb_015807_040 0.072338964 - - PREDICTED: polycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM [Jatropha curcas]
15 Hb_000307_090 0.0755992751 - - hypothetical protein CICLE_v10002475mg [Citrus clementina]
16 Hb_002477_070 0.0771246104 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
17 Hb_033834_040 0.0773108982 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003126_080 0.0775295819 - - PREDICTED: uncharacterized protein LOC105647117 [Jatropha curcas]
19 Hb_000373_120 0.077538992 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105629120 [Jatropha curcas]
20 Hb_000059_370 0.0784138686 - - PREDICTED: U6 snRNA phosphodiesterase [Jatropha curcas]

Gene co-expression network

sample Hb_003599_040 Hb_003599_040 Hb_002284_240 Hb_002284_240 Hb_003599_040--Hb_002284_240 Hb_159809_020 Hb_159809_020 Hb_003599_040--Hb_159809_020 Hb_000926_300 Hb_000926_300 Hb_003599_040--Hb_000926_300 Hb_002685_190 Hb_002685_190 Hb_003599_040--Hb_002685_190 Hb_000327_190 Hb_000327_190 Hb_003599_040--Hb_000327_190 Hb_000007_100 Hb_000007_100 Hb_003599_040--Hb_000007_100 Hb_002284_240--Hb_159809_020 Hb_000926_250 Hb_000926_250 Hb_002284_240--Hb_000926_250 Hb_002284_240--Hb_000007_100 Hb_000020_060 Hb_000020_060 Hb_002284_240--Hb_000020_060 Hb_002284_240--Hb_000327_190 Hb_002963_010 Hb_002963_010 Hb_159809_020--Hb_002963_010 Hb_159809_020--Hb_000020_060 Hb_010504_020 Hb_010504_020 Hb_159809_020--Hb_010504_020 Hb_159809_020--Hb_000926_250 Hb_000926_300--Hb_000007_100 Hb_128048_010 Hb_128048_010 Hb_000926_300--Hb_128048_010 Hb_012573_070 Hb_012573_070 Hb_000926_300--Hb_012573_070 Hb_000926_300--Hb_002284_240 Hb_000307_090 Hb_000307_090 Hb_000926_300--Hb_000307_090 Hb_004204_120 Hb_004204_120 Hb_002685_190--Hb_004204_120 Hb_002685_190--Hb_002963_010 Hb_000465_060 Hb_000465_060 Hb_002685_190--Hb_000465_060 Hb_009954_040 Hb_009954_040 Hb_002685_190--Hb_009954_040 Hb_001278_110 Hb_001278_110 Hb_002685_190--Hb_001278_110 Hb_000327_190--Hb_000926_250 Hb_002477_070 Hb_002477_070 Hb_000327_190--Hb_002477_070 Hb_033834_040 Hb_033834_040 Hb_000327_190--Hb_033834_040 Hb_008900_010 Hb_008900_010 Hb_000327_190--Hb_008900_010 Hb_000007_100--Hb_000926_250 Hb_000380_190 Hb_000380_190 Hb_000007_100--Hb_000380_190 Hb_009793_010 Hb_009793_010 Hb_000007_100--Hb_009793_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.3997 7.48833 9.27942 9.97561 17.3271 21.2533
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.4872 34.3827 15.8447 14.8821 8.92248

CAGE analysis