Hb_003602_020

Information

Type -
Description -
Location Contig3602: 12946-26545
Sequence    

Annotation

kegg
ID rcu:RCOM_0482360
description serine hydroxymethyltransferase, putative (EC:2.1.2.1)
nr
ID XP_012068074.1
description PREDICTED: serine hydroxymethyltransferase, mitochondrial-like [Jatropha curcas]
swissprot
ID P50433
description Serine hydroxymethyltransferase, mitochondrial OS=Solanum tuberosum PE=2 SV=1
trembl
ID A0A067LAI0
description Serine hydroxymethyltransferase OS=Jatropha curcas GN=JCGZ_15927 PE=3 SV=1
Gene Ontology
ID GO:0005634
description serine mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37101: 12976-26549 , PASA_asmbl_37102: 12978-26482 , PASA_asmbl_37103: 13464-16504
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003602_020 0.0 - - PREDICTED: serine hydroxymethyltransferase, mitochondrial-like [Jatropha curcas]
2 Hb_000049_160 0.1068714878 - - tyrosine decarboxylase family protein [Populus trichocarpa]
3 Hb_008025_010 0.1077040893 - - PREDICTED: lysosomal beta glucosidase-like [Musa acuminata subsp. malaccensis]
4 Hb_002193_060 0.1170827296 - - PREDICTED: uncharacterized protein C4orf29 homolog [Pyrus x bretschneideri]
5 Hb_002781_050 0.1171331888 - - cytochrome B5 isoform 1, putative [Ricinus communis]
6 Hb_003994_030 0.1173432073 - - PREDICTED: organic cation/carnitine transporter 7 [Jatropha curcas]
7 Hb_001486_040 0.1200569385 - - PREDICTED: uncharacterized protein LOC105632624 isoform X1 [Jatropha curcas]
8 Hb_003207_020 0.1224050755 - - PREDICTED: bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Jatropha curcas]
9 Hb_000008_340 0.1254694168 - - PREDICTED: aquaporin PIP2-4 [Jatropha curcas]
10 Hb_002902_140 0.1258297576 - - PREDICTED: probable prolyl 4-hydroxylase 9 [Jatropha curcas]
11 Hb_000007_060 0.1266167792 - - PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating 1-like isoform X1 [Jatropha curcas]
12 Hb_000367_180 0.1266838557 - - Heparanase-2, putative [Ricinus communis]
13 Hb_011486_060 0.1269251928 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000665_180 0.1270469138 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X2 [Jatropha curcas]
15 Hb_000860_060 0.1290189837 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 6 [Jatropha curcas]
16 Hb_000260_510 0.12953938 - - PREDICTED: probable galacturonosyltransferase 7 isoform X3 [Jatropha curcas]
17 Hb_019654_020 0.1311611937 - - PREDICTED: T-complex protein 1 subunit beta [Jatropha curcas]
18 Hb_002955_020 0.1318448257 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
19 Hb_021943_090 0.1328620766 - - PREDICTED: probable methylenetetrahydrofolate reductase [Jatropha curcas]
20 Hb_000395_110 0.1348887634 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]

Gene co-expression network

sample Hb_003602_020 Hb_003602_020 Hb_000049_160 Hb_000049_160 Hb_003602_020--Hb_000049_160 Hb_008025_010 Hb_008025_010 Hb_003602_020--Hb_008025_010 Hb_002193_060 Hb_002193_060 Hb_003602_020--Hb_002193_060 Hb_002781_050 Hb_002781_050 Hb_003602_020--Hb_002781_050 Hb_003994_030 Hb_003994_030 Hb_003602_020--Hb_003994_030 Hb_001486_040 Hb_001486_040 Hb_003602_020--Hb_001486_040 Hb_001619_060 Hb_001619_060 Hb_000049_160--Hb_001619_060 Hb_000049_180 Hb_000049_180 Hb_000049_160--Hb_000049_180 Hb_002955_020 Hb_002955_020 Hb_000049_160--Hb_002955_020 Hb_000096_190 Hb_000096_190 Hb_000049_160--Hb_000096_190 Hb_000665_180 Hb_000665_180 Hb_000049_160--Hb_000665_180 Hb_000008_340 Hb_000008_340 Hb_000049_160--Hb_000008_340 Hb_005074_040 Hb_005074_040 Hb_008025_010--Hb_005074_040 Hb_003058_100 Hb_003058_100 Hb_008025_010--Hb_003058_100 Hb_014497_010 Hb_014497_010 Hb_008025_010--Hb_014497_010 Hb_003929_180 Hb_003929_180 Hb_008025_010--Hb_003929_180 Hb_002942_230 Hb_002942_230 Hb_008025_010--Hb_002942_230 Hb_003540_080 Hb_003540_080 Hb_008025_010--Hb_003540_080 Hb_185830_060 Hb_185830_060 Hb_002193_060--Hb_185830_060 Hb_000375_300 Hb_000375_300 Hb_002193_060--Hb_000375_300 Hb_000395_110 Hb_000395_110 Hb_002193_060--Hb_000395_110 Hb_018845_010 Hb_018845_010 Hb_002193_060--Hb_018845_010 Hb_000007_090 Hb_000007_090 Hb_002193_060--Hb_000007_090 Hb_007416_070 Hb_007416_070 Hb_002193_060--Hb_007416_070 Hb_000696_070 Hb_000696_070 Hb_002781_050--Hb_000696_070 Hb_001148_100 Hb_001148_100 Hb_002781_050--Hb_001148_100 Hb_001148_090 Hb_001148_090 Hb_002781_050--Hb_001148_090 Hb_001369_630 Hb_001369_630 Hb_002781_050--Hb_001369_630 Hb_048476_060 Hb_048476_060 Hb_002781_050--Hb_048476_060 Hb_001957_010 Hb_001957_010 Hb_003994_030--Hb_001957_010 Hb_003207_020 Hb_003207_020 Hb_003994_030--Hb_003207_020 Hb_021943_090 Hb_021943_090 Hb_003994_030--Hb_021943_090 Hb_002110_100 Hb_002110_100 Hb_003994_030--Hb_002110_100 Hb_003994_030--Hb_002193_060 Hb_005701_120 Hb_005701_120 Hb_003994_030--Hb_005701_120 Hb_001486_040--Hb_185830_060 Hb_001486_040--Hb_003207_020 Hb_010042_020 Hb_010042_020 Hb_001486_040--Hb_010042_020 Hb_033152_070 Hb_033152_070 Hb_001486_040--Hb_033152_070 Hb_001486_040--Hb_002193_060 Hb_001486_040--Hb_002955_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.4694 6.73482 35.6471 73.4134 7.34288 9.20426
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.8536 13.8002 9.51006 36.3965 45.0114

CAGE analysis