Hb_003602_030

Information

Type -
Description -
Location Contig3602: 27596-31386
Sequence    

Annotation

kegg
ID mdm:103416243
description putative pentatricopeptide repeat-containing protein At5g52630
nr
ID XP_012068076.1
description PREDICTED: putative pentatricopeptide repeat-containing protein At5g52630 [Jatropha curcas]
swissprot
ID Q9CAA8
description Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1
trembl
ID A0A067KZ85
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15928 PE=4 SV=1
Gene Ontology
ID GO:0009451
description pentatricopeptide repeat-containing protein at5g52630

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37104: 27715-30620
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003602_030 0.0 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g52630 [Jatropha curcas]
2 Hb_137600_010 0.1046789494 - - 50S ribosomal protein L1p, putative [Ricinus communis]
3 Hb_000479_210 0.1266534993 - - PREDICTED: uncharacterized protein LOC105644126 [Jatropha curcas]
4 Hb_006277_080 0.1269019876 - - PREDICTED: uncharacterized protein LOC105649701 [Jatropha curcas]
5 Hb_001257_110 0.1275140296 - - PREDICTED: uncharacterized protein LOC105636396 [Jatropha curcas]
6 Hb_000254_120 0.1280591269 - - conserved hypothetical protein [Ricinus communis]
7 Hb_005977_040 0.1288323806 - - Photosystem I reaction center subunit IV A [Medicago truncatula]
8 Hb_074548_010 0.1311218769 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_002485_050 0.1365974102 - - PREDICTED: probable plastid-lipid-associated protein 12, chloroplastic [Jatropha curcas]
10 Hb_003605_060 0.1393220491 - - PREDICTED: ATP synthase subunit delta, chloroplastic [Jatropha curcas]
11 Hb_001377_060 0.1409425663 - - PREDICTED: pentatricopeptide repeat-containing protein At4g01030, mitochondrial [Jatropha curcas]
12 Hb_000002_300 0.1437074713 - - Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis]
13 Hb_000856_280 0.1440602997 - - PREDICTED: uncharacterized protein LOC105640491 [Jatropha curcas]
14 Hb_011649_010 0.1443727254 transcription factor TF Family: Pseudo ARR-B sensory transduction histidine kinase, putative [Ricinus communis]
15 Hb_007253_030 0.1449155335 - - PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Populus euphratica]
16 Hb_000193_220 0.1466677409 - - PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic [Jatropha curcas]
17 Hb_002811_250 0.1484016933 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
18 Hb_010721_020 0.1485987987 - - PREDICTED: photosynthetic NDH subunit of lumenal location 4, chloroplastic [Jatropha curcas]
19 Hb_001584_050 0.1490490096 - - PREDICTED: NHL repeat-containing protein 2 isoform X1 [Jatropha curcas]
20 Hb_003373_050 0.14959556 - - receptor protein kinase zmpk1, putative [Ricinus communis]

Gene co-expression network

sample Hb_003602_030 Hb_003602_030 Hb_137600_010 Hb_137600_010 Hb_003602_030--Hb_137600_010 Hb_000479_210 Hb_000479_210 Hb_003602_030--Hb_000479_210 Hb_006277_080 Hb_006277_080 Hb_003602_030--Hb_006277_080 Hb_001257_110 Hb_001257_110 Hb_003602_030--Hb_001257_110 Hb_000254_120 Hb_000254_120 Hb_003602_030--Hb_000254_120 Hb_005977_040 Hb_005977_040 Hb_003602_030--Hb_005977_040 Hb_137600_010--Hb_000479_210 Hb_004324_120 Hb_004324_120 Hb_137600_010--Hb_004324_120 Hb_001999_260 Hb_001999_260 Hb_137600_010--Hb_001999_260 Hb_005488_190 Hb_005488_190 Hb_137600_010--Hb_005488_190 Hb_173660_010 Hb_173660_010 Hb_137600_010--Hb_173660_010 Hb_000834_060 Hb_000834_060 Hb_000479_210--Hb_000834_060 Hb_003605_060 Hb_003605_060 Hb_000479_210--Hb_003605_060 Hb_002485_050 Hb_002485_050 Hb_000479_210--Hb_002485_050 Hb_074548_010 Hb_074548_010 Hb_000479_210--Hb_074548_010 Hb_002811_250 Hb_002811_250 Hb_000479_210--Hb_002811_250 Hb_000853_050 Hb_000853_050 Hb_006277_080--Hb_000853_050 Hb_140389_010 Hb_140389_010 Hb_006277_080--Hb_140389_010 Hb_000926_070 Hb_000926_070 Hb_006277_080--Hb_000926_070 Hb_002276_030 Hb_002276_030 Hb_006277_080--Hb_002276_030 Hb_003141_060 Hb_003141_060 Hb_006277_080--Hb_003141_060 Hb_001775_100 Hb_001775_100 Hb_001257_110--Hb_001775_100 Hb_005063_060 Hb_005063_060 Hb_001257_110--Hb_005063_060 Hb_001257_110--Hb_074548_010 Hb_002799_060 Hb_002799_060 Hb_001257_110--Hb_002799_060 Hb_005523_040 Hb_005523_040 Hb_001257_110--Hb_005523_040 Hb_003905_030 Hb_003905_030 Hb_001257_110--Hb_003905_030 Hb_001377_060 Hb_001377_060 Hb_000254_120--Hb_001377_060 Hb_002835_090 Hb_002835_090 Hb_000254_120--Hb_002835_090 Hb_001584_050 Hb_001584_050 Hb_000254_120--Hb_001584_050 Hb_005332_150 Hb_005332_150 Hb_000254_120--Hb_005332_150 Hb_011900_020 Hb_011900_020 Hb_000254_120--Hb_011900_020 Hb_002609_140 Hb_002609_140 Hb_005977_040--Hb_002609_140 Hb_005977_040--Hb_074548_010 Hb_000544_070 Hb_000544_070 Hb_005977_040--Hb_000544_070 Hb_000161_010 Hb_000161_010 Hb_005977_040--Hb_000161_010 Hb_005977_040--Hb_005523_040 Hb_005977_040--Hb_001257_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.510203 3.26307 9.33685 2.51974 0.803684 0.643561
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.108799 0.154093 0.519934 0.830765 17.2761

CAGE analysis