Hb_003602_050

Information

Type -
Description -
Location Contig3602: 36838-39089
Sequence    

Annotation

kegg
ID rcu:RCOM_0482300
description zinc binding dehydrogenase, putative
nr
ID XP_002527341.1
description zinc binding dehydrogenase, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SMX2
description Zinc binding dehydrogenase, putative OS=Ricinus communis GN=RCOM_0482300 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003602_050 0.0 - - zinc binding dehydrogenase, putative [Ricinus communis]
2 Hb_007747_190 0.1814479345 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000847_140 0.1817838189 - - -
4 Hb_000563_270 0.2140294551 - - -
5 Hb_012305_120 0.2186861623 - - PREDICTED: 60S ribosomal protein L29-1-like [Glycine max]
6 Hb_007532_040 0.2240903923 - - -
7 Hb_003086_120 0.2377000501 - - PREDICTED: uncharacterized protein LOC105628509 [Jatropha curcas]
8 Hb_003081_030 0.2428481492 - - PREDICTED: uncharacterized protein LOC101256381 [Solanum lycopersicum]
9 Hb_001296_030 0.2480777831 - - PREDICTED: uncharacterized protein LOC105638276 [Jatropha curcas]
10 Hb_008841_010 0.2560657505 - - PREDICTED: uncharacterized protein LOC103323653 [Prunus mume]
11 Hb_000098_220 0.2570147461 - - PREDICTED: VQ motif-containing protein 4 [Jatropha curcas]
12 Hb_000039_170 0.2570844545 - - protein MOTHER of FT and TF 1-like [Jatropha curcas]
13 Hb_000493_010 0.2612626177 - - hypothetical protein CICLE_v10021431mg [Citrus clementina]
14 Hb_008699_040 0.2621797058 - - -
15 Hb_012395_200 0.264675231 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000227_130 0.2687225617 - - PREDICTED: peroxiredoxin-2F, mitochondrial [Jatropha curcas]
17 Hb_000107_640 0.2693361725 - - conserved hypothetical protein [Ricinus communis]
18 Hb_080147_090 0.2709855724 - - hypothetical protein JCGZ_07271 [Jatropha curcas]
19 Hb_000003_350 0.2721580236 - - hypothetical protein POPTR_1155s00200g, partial [Populus trichocarpa]
20 Hb_001950_120 0.2724484131 - - PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_003602_050 Hb_003602_050 Hb_007747_190 Hb_007747_190 Hb_003602_050--Hb_007747_190 Hb_000847_140 Hb_000847_140 Hb_003602_050--Hb_000847_140 Hb_000563_270 Hb_000563_270 Hb_003602_050--Hb_000563_270 Hb_012305_120 Hb_012305_120 Hb_003602_050--Hb_012305_120 Hb_007532_040 Hb_007532_040 Hb_003602_050--Hb_007532_040 Hb_003086_120 Hb_003086_120 Hb_003602_050--Hb_003086_120 Hb_007747_190--Hb_003086_120 Hb_000703_260 Hb_000703_260 Hb_007747_190--Hb_000703_260 Hb_000227_130 Hb_000227_130 Hb_007747_190--Hb_000227_130 Hb_150379_010 Hb_150379_010 Hb_007747_190--Hb_150379_010 Hb_075136_010 Hb_075136_010 Hb_007747_190--Hb_075136_010 Hb_000847_140--Hb_012305_120 Hb_008699_040 Hb_008699_040 Hb_000847_140--Hb_008699_040 Hb_000039_170 Hb_000039_170 Hb_000847_140--Hb_000039_170 Hb_015978_070 Hb_015978_070 Hb_000847_140--Hb_015978_070 Hb_004474_010 Hb_004474_010 Hb_000847_140--Hb_004474_010 Hb_001623_430 Hb_001623_430 Hb_000847_140--Hb_001623_430 Hb_000348_040 Hb_000348_040 Hb_000563_270--Hb_000348_040 Hb_000563_270--Hb_000847_140 Hb_015091_010 Hb_015091_010 Hb_000563_270--Hb_015091_010 Hb_010997_020 Hb_010997_020 Hb_000563_270--Hb_010997_020 Hb_063511_010 Hb_063511_010 Hb_000563_270--Hb_063511_010 Hb_012305_120--Hb_015978_070 Hb_000345_430 Hb_000345_430 Hb_012305_120--Hb_000345_430 Hb_012305_120--Hb_001623_430 Hb_007520_060 Hb_007520_060 Hb_012305_120--Hb_007520_060 Hb_009659_020 Hb_009659_020 Hb_012305_120--Hb_009659_020 Hb_000493_010 Hb_000493_010 Hb_007532_040--Hb_000493_010 Hb_007532_040--Hb_012305_120 Hb_001296_030 Hb_001296_030 Hb_007532_040--Hb_001296_030 Hb_009346_040 Hb_009346_040 Hb_007532_040--Hb_009346_040 Hb_020035_020 Hb_020035_020 Hb_007532_040--Hb_020035_020 Hb_008841_010 Hb_008841_010 Hb_007532_040--Hb_008841_010 Hb_001969_010 Hb_001969_010 Hb_003086_120--Hb_001969_010 Hb_000449_040 Hb_000449_040 Hb_003086_120--Hb_000449_040 Hb_003086_120--Hb_000227_130 Hb_000096_060 Hb_000096_060 Hb_003086_120--Hb_000096_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.518661 0 0 0 0.054053 8.26704
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.15793 5.62837 2.07651 2.55118 0.523774

CAGE analysis