Hb_003602_060

Information

Type -
Description -
Location Contig3602: 39519-44773
Sequence    

Annotation

kegg
ID pop:POPTR_0002s10920g
description POPTRDRAFT_852146; hypothetical protein
nr
ID XP_012068084.1
description PREDICTED: phosphoglycerate mutase-like protein 1 [Jatropha curcas]
swissprot
ID Q9FGF0
description Phosphoglycerate mutase-like protein 1 OS=Arabidopsis thaliana GN=At5g64460 PE=2 SV=1
trembl
ID B9GN62
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s10920g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37108: 39622-43694
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003602_060 0.0 - - PREDICTED: phosphoglycerate mutase-like protein 1 [Jatropha curcas]
2 Hb_154038_020 0.0804204448 - - hypothetical protein JCGZ_05648 [Jatropha curcas]
3 Hb_093458_010 0.0977527334 - - hypothetical protein CISIN_1g0277592mg [Citrus sinensis]
4 Hb_027506_040 0.0978693023 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [Jatropha curcas]
5 Hb_007441_080 0.1060107625 - - PREDICTED: ELMO domain-containing protein C-like [Jatropha curcas]
6 Hb_001863_070 0.107494376 - - Queuine tRNA-ribosyltransferase [Theobroma cacao]
7 Hb_002007_320 0.1135730245 - - PREDICTED: mitogen-activated protein kinase kinase kinase ANP1 [Jatropha curcas]
8 Hb_001322_230 0.1152950457 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Populus euphratica]
9 Hb_000012_110 0.1153245197 - - hypothetical protein CICLE_v10008613mg [Citrus clementina]
10 Hb_001998_200 0.1193352348 - - UDP-glucose 4-epimerase, putative [Ricinus communis]
11 Hb_002615_030 0.1207932405 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A-like [Populus euphratica]
12 Hb_009780_050 0.1255272433 - - PREDICTED: glutathione S-transferase DHAR3, chloroplastic [Jatropha curcas]
13 Hb_065525_120 0.1258995751 - - dtdp-glucose 4-6-dehydratase, putative [Ricinus communis]
14 Hb_001619_060 0.1266322764 - - PREDICTED: uncharacterized methyltransferase At1g78140, chloroplastic [Jatropha curcas]
15 Hb_000684_030 0.1267596647 - - syntaxin, putative [Ricinus communis]
16 Hb_002217_100 0.1275219965 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase dihydrolipoamide dehydrogenase, putative [Ricinus communis]
17 Hb_001711_120 0.1279086883 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]
18 Hb_001329_070 0.1282099164 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
19 Hb_000926_080 0.1286062856 - - PREDICTED: paraspeckle component 1 [Jatropha curcas]
20 Hb_002534_130 0.1292741586 - - membrane associated ring finger 1,8, putative [Ricinus communis]

Gene co-expression network

sample Hb_003602_060 Hb_003602_060 Hb_154038_020 Hb_154038_020 Hb_003602_060--Hb_154038_020 Hb_093458_010 Hb_093458_010 Hb_003602_060--Hb_093458_010 Hb_027506_040 Hb_027506_040 Hb_003602_060--Hb_027506_040 Hb_007441_080 Hb_007441_080 Hb_003602_060--Hb_007441_080 Hb_001863_070 Hb_001863_070 Hb_003602_060--Hb_001863_070 Hb_002007_320 Hb_002007_320 Hb_003602_060--Hb_002007_320 Hb_001767_060 Hb_001767_060 Hb_154038_020--Hb_001767_060 Hb_065525_120 Hb_065525_120 Hb_154038_020--Hb_065525_120 Hb_009780_050 Hb_009780_050 Hb_154038_020--Hb_009780_050 Hb_001904_050 Hb_001904_050 Hb_154038_020--Hb_001904_050 Hb_154038_020--Hb_093458_010 Hb_093458_010--Hb_001767_060 Hb_015807_160 Hb_015807_160 Hb_093458_010--Hb_015807_160 Hb_040819_010 Hb_040819_010 Hb_093458_010--Hb_040819_010 Hb_093458_010--Hb_001863_070 Hb_000645_200 Hb_000645_200 Hb_093458_010--Hb_000645_200 Hb_000926_080 Hb_000926_080 Hb_027506_040--Hb_000926_080 Hb_000200_300 Hb_000200_300 Hb_027506_040--Hb_000200_300 Hb_011671_260 Hb_011671_260 Hb_027506_040--Hb_011671_260 Hb_000398_170 Hb_000398_170 Hb_027506_040--Hb_000398_170 Hb_000684_030 Hb_000684_030 Hb_027506_040--Hb_000684_030 Hb_002110_100 Hb_002110_100 Hb_007441_080--Hb_002110_100 Hb_000742_020 Hb_000742_020 Hb_007441_080--Hb_000742_020 Hb_007441_080--Hb_000684_030 Hb_000590_120 Hb_000590_120 Hb_007441_080--Hb_000590_120 Hb_003875_030 Hb_003875_030 Hb_007441_080--Hb_003875_030 Hb_011242_050 Hb_011242_050 Hb_001863_070--Hb_011242_050 Hb_002027_440 Hb_002027_440 Hb_001863_070--Hb_002027_440 Hb_000800_020 Hb_000800_020 Hb_001863_070--Hb_000800_020 Hb_013405_070 Hb_013405_070 Hb_001863_070--Hb_013405_070 Hb_001322_230 Hb_001322_230 Hb_001863_070--Hb_001322_230 Hb_002193_060 Hb_002193_060 Hb_002007_320--Hb_002193_060 Hb_003371_070 Hb_003371_070 Hb_002007_320--Hb_003371_070 Hb_000375_300 Hb_000375_300 Hb_002007_320--Hb_000375_300 Hb_000935_040 Hb_000935_040 Hb_002007_320--Hb_000935_040 Hb_000012_080 Hb_000012_080 Hb_002007_320--Hb_000012_080 Hb_000023_310 Hb_000023_310 Hb_002007_320--Hb_000023_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.71924 6.20793 22.3838 21.0909 1.29718 2.57124
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.36748 14.7809 8.27708 7.84905 17.6428

CAGE analysis