Hb_003602_100

Information

Type -
Description -
Location Contig3602: 107020-110514
Sequence    

Annotation

kegg
ID rcu:RCOM_1583670
description Glutamyl-tRNA reductase 1, chloroplast precursor, putative (EC:1.2.1.70)
nr
ID XP_002509995.1
description Glutamyl-tRNA reductase 1, chloroplast precursor, putative [Ricinus communis]
swissprot
ID P93111
description Glutamyl-tRNA reductase 1, chloroplastic OS=Cucumis sativus GN=HEMA1 PE=2 SV=1
trembl
ID B9R6Q2
description Glutamyl-tRNA reductase OS=Ricinus communis GN=RCOM_1583670 PE=3 SV=1
Gene Ontology
ID GO:0009507
description glutamyl-trna reductase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37113: 106847-110437
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003602_100 0.0 - - Glutamyl-tRNA reductase 1, chloroplast precursor, putative [Ricinus communis]
2 Hb_002249_090 0.0775554813 - - PREDICTED: magnesium protoporphyrin IX methyltransferase, chloroplastic [Jatropha curcas]
3 Hb_001195_290 0.0932321689 - - PREDICTED: uncharacterized protein LOC105633792 [Jatropha curcas]
4 Hb_003120_020 0.0934854264 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 13-like [Prunus mume]
5 Hb_010326_020 0.0948137555 - - PREDICTED: thioredoxin-like 4, chloroplastic [Jatropha curcas]
6 Hb_000049_100 0.0977127456 - - Photosystem II reaction center W protein, putative [Ricinus communis]
7 Hb_007803_040 0.1044718733 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic [Jatropha curcas]
8 Hb_000881_070 0.1047050131 - - nucleic acid binding protein, putative [Ricinus communis]
9 Hb_000174_080 0.1053071275 - - 4-nitrophenylphosphatase, putative [Ricinus communis]
10 Hb_000390_160 0.1065827112 - - PREDICTED: adenosine kinase [Jatropha curcas]
11 Hb_002235_070 0.1069374627 - - PREDICTED: uncharacterized protein LOC105644108 [Jatropha curcas]
12 Hb_001584_210 0.1075832082 - - PREDICTED: chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Jatropha curcas]
13 Hb_003020_120 0.1079665461 - - PREDICTED: protein TIC 62, chloroplastic [Populus euphratica]
14 Hb_005210_010 0.109301787 - - PREDICTED: uncharacterized protein LOC105638163 [Jatropha curcas]
15 Hb_003847_070 0.1111942933 - - PREDICTED: violaxanthin de-epoxidase, chloroplastic [Jatropha curcas]
16 Hb_003632_020 0.1112188465 - - calcium-binding family protein [Populus trichocarpa]
17 Hb_000544_070 0.1139602878 - - Peptidyl-prolyl cis-trans isomerase FKBP17-2 [Morus notabilis]
18 Hb_007044_270 0.1169642823 - - PREDICTED: uncharacterized protein LOC105638707 isoform X2 [Jatropha curcas]
19 Hb_002375_030 0.1170699262 - - F-box family protein [Populus trichocarpa]
20 Hb_000083_180 0.1172220914 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]

Gene co-expression network

sample Hb_003602_100 Hb_003602_100 Hb_002249_090 Hb_002249_090 Hb_003602_100--Hb_002249_090 Hb_001195_290 Hb_001195_290 Hb_003602_100--Hb_001195_290 Hb_003120_020 Hb_003120_020 Hb_003602_100--Hb_003120_020 Hb_010326_020 Hb_010326_020 Hb_003602_100--Hb_010326_020 Hb_000049_100 Hb_000049_100 Hb_003602_100--Hb_000049_100 Hb_007803_040 Hb_007803_040 Hb_003602_100--Hb_007803_040 Hb_000174_080 Hb_000174_080 Hb_002249_090--Hb_000174_080 Hb_002609_140 Hb_002609_140 Hb_002249_090--Hb_002609_140 Hb_000544_070 Hb_000544_070 Hb_002249_090--Hb_000544_070 Hb_000648_070 Hb_000648_070 Hb_002249_090--Hb_000648_070 Hb_107647_010 Hb_107647_010 Hb_002249_090--Hb_107647_010 Hb_006472_040 Hb_006472_040 Hb_001195_290--Hb_006472_040 Hb_001517_010 Hb_001517_010 Hb_001195_290--Hb_001517_010 Hb_008112_020 Hb_008112_020 Hb_001195_290--Hb_008112_020 Hb_005210_010 Hb_005210_010 Hb_001195_290--Hb_005210_010 Hb_001268_170 Hb_001268_170 Hb_001195_290--Hb_001268_170 Hb_134949_010 Hb_134949_010 Hb_001195_290--Hb_134949_010 Hb_003120_020--Hb_000049_100 Hb_000808_130 Hb_000808_130 Hb_003120_020--Hb_000808_130 Hb_000881_070 Hb_000881_070 Hb_003120_020--Hb_000881_070 Hb_003120_020--Hb_010326_020 Hb_001534_060 Hb_001534_060 Hb_003120_020--Hb_001534_060 Hb_002375_030 Hb_002375_030 Hb_003120_020--Hb_002375_030 Hb_003632_020 Hb_003632_020 Hb_010326_020--Hb_003632_020 Hb_011724_040 Hb_011724_040 Hb_010326_020--Hb_011724_040 Hb_003020_120 Hb_003020_120 Hb_010326_020--Hb_003020_120 Hb_000230_420 Hb_000230_420 Hb_010326_020--Hb_000230_420 Hb_000369_110 Hb_000369_110 Hb_010326_020--Hb_000369_110 Hb_010326_020--Hb_000049_100 Hb_000390_160 Hb_000390_160 Hb_000049_100--Hb_000390_160 Hb_000254_130 Hb_000254_130 Hb_000049_100--Hb_000254_130 Hb_000049_100--Hb_002375_030 Hb_000049_100--Hb_003632_020 Hb_002485_050 Hb_002485_050 Hb_007803_040--Hb_002485_050 Hb_000856_280 Hb_000856_280 Hb_007803_040--Hb_000856_280 Hb_009393_130 Hb_009393_130 Hb_007803_040--Hb_009393_130 Hb_005488_190 Hb_005488_190 Hb_007803_040--Hb_005488_190 Hb_003605_060 Hb_003605_060 Hb_007803_040--Hb_003605_060 Hb_007803_040--Hb_000544_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.9561 3.17163 89.8758 34.6341 3.17241 1.80395
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.71674 1.39398 1.88913 1.68387 151.926

CAGE analysis