Hb_003605_020

Information

Type -
Description -
Location Contig3605: 2677-24303
Sequence    

Annotation

kegg
ID rcu:RCOM_0298480
description exocyst complex component sec6, putative
nr
ID XP_002527131.1
description exocyst complex component sec6, putative [Ricinus communis]
swissprot
ID Q94AI6
description Exocyst complex component SEC6 OS=Arabidopsis thaliana GN=SEC6 PE=1 SV=1
trembl
ID B9SMB2
description Exocyst complex component sec6, putative OS=Ricinus communis GN=RCOM_0298480 PE=4 SV=1
Gene Ontology
ID GO:0000145
description exocyst complex component sec6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37121: 2807-8036 , PASA_asmbl_37122: 17309-17794 , PASA_asmbl_37124: 22487-22699 , PASA_asmbl_37125: 22753-23071
cDNA
(Sanger)
(ID:Location)		 003_H08.ab1: 2807-6614 , 030_L12.ab1: 2807-5672

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003605_020 0.0 - - exocyst complex component sec6, putative [Ricinus communis]
2 Hb_065968_010 0.0641312661 - - PREDICTED: probable glycosyltransferase At3g07620 isoform X2 [Jatropha curcas]
3 Hb_000395_280 0.0694890668 - - PREDICTED: thioredoxin-related transmembrane protein 2 [Vitis vinifera]
4 Hb_001957_010 0.0728934949 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g14410 isoform X1 [Jatropha curcas]
5 Hb_000174_260 0.0748074179 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent) [Jatropha curcas]
6 Hb_001269_130 0.0828582319 - - plant poly(A)+ RNA export protein, putative [Ricinus communis]
7 Hb_019654_020 0.0858027137 - - PREDICTED: T-complex protein 1 subunit beta [Jatropha curcas]
8 Hb_012733_040 0.0872052005 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
9 Hb_005754_040 0.0880245377 - - PREDICTED: uncharacterized protein LOC105636678 isoform X2 [Jatropha curcas]
10 Hb_000367_180 0.0888351714 - - Heparanase-2, putative [Ricinus communis]
11 Hb_159809_070 0.0894337829 - - phospholipase A-2-activating protein, putative [Ricinus communis]
12 Hb_000684_030 0.0902370991 - - syntaxin, putative [Ricinus communis]
13 Hb_000078_140 0.0925964231 - - PREDICTED: WD repeat-containing protein 11 [Jatropha curcas]
14 Hb_001946_390 0.0928052429 - - PREDICTED: NADH-cytochrome b5 reductase-like protein [Jatropha curcas]
15 Hb_003159_050 0.0934655332 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial isoform X1 [Jatropha curcas]
16 Hb_074197_040 0.0942034348 - - PREDICTED: SNARE-interacting protein KEULE [Jatropha curcas]
17 Hb_002686_200 0.0961100839 - - glucosidase II beta subunit, putative [Ricinus communis]
18 Hb_006570_160 0.0965112624 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
19 Hb_001221_030 0.0973809657 - - PREDICTED: adenylate kinase 4 [Jatropha curcas]
20 Hb_008304_020 0.0991055744 - - PREDICTED: ATP-dependent RNA helicase DBP2-like [Jatropha curcas]

Gene co-expression network

sample Hb_003605_020 Hb_003605_020 Hb_065968_010 Hb_065968_010 Hb_003605_020--Hb_065968_010 Hb_000395_280 Hb_000395_280 Hb_003605_020--Hb_000395_280 Hb_001957_010 Hb_001957_010 Hb_003605_020--Hb_001957_010 Hb_000174_260 Hb_000174_260 Hb_003605_020--Hb_000174_260 Hb_001269_130 Hb_001269_130 Hb_003605_020--Hb_001269_130 Hb_019654_020 Hb_019654_020 Hb_003605_020--Hb_019654_020 Hb_002686_200 Hb_002686_200 Hb_065968_010--Hb_002686_200 Hb_159809_070 Hb_159809_070 Hb_065968_010--Hb_159809_070 Hb_002552_040 Hb_002552_040 Hb_065968_010--Hb_002552_040 Hb_074197_040 Hb_074197_040 Hb_065968_010--Hb_074197_040 Hb_065968_010--Hb_001957_010 Hb_005754_040 Hb_005754_040 Hb_000395_280--Hb_005754_040 Hb_000395_280--Hb_065968_010 Hb_000395_280--Hb_001957_010 Hb_000395_280--Hb_002552_040 Hb_001227_120 Hb_001227_120 Hb_000395_280--Hb_001227_120 Hb_000197_190 Hb_000197_190 Hb_001957_010--Hb_000197_190 Hb_001507_120 Hb_001507_120 Hb_001957_010--Hb_001507_120 Hb_003994_030 Hb_003994_030 Hb_001957_010--Hb_003994_030 Hb_005276_040 Hb_005276_040 Hb_000174_260--Hb_005276_040 Hb_001221_030 Hb_001221_030 Hb_000174_260--Hb_001221_030 Hb_000330_090 Hb_000330_090 Hb_000174_260--Hb_000330_090 Hb_000684_030 Hb_000684_030 Hb_000174_260--Hb_000684_030 Hb_000174_260--Hb_001269_130 Hb_000663_060 Hb_000663_060 Hb_001269_130--Hb_000663_060 Hb_000080_130 Hb_000080_130 Hb_001269_130--Hb_000080_130 Hb_000364_050 Hb_000364_050 Hb_001269_130--Hb_000364_050 Hb_003098_070 Hb_003098_070 Hb_001269_130--Hb_003098_070 Hb_006824_010 Hb_006824_010 Hb_001269_130--Hb_006824_010 Hb_005946_150 Hb_005946_150 Hb_001269_130--Hb_005946_150 Hb_000367_180 Hb_000367_180 Hb_019654_020--Hb_000367_180 Hb_000007_060 Hb_000007_060 Hb_019654_020--Hb_000007_060 Hb_015884_020 Hb_015884_020 Hb_019654_020--Hb_015884_020 Hb_000979_130 Hb_000979_130 Hb_019654_020--Hb_000979_130 Hb_000585_110 Hb_000585_110 Hb_019654_020--Hb_000585_110 Hb_003058_100 Hb_003058_100 Hb_019654_020--Hb_003058_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.39883 1.15532 5.19571 4.90646 1.79886 1.45619
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.16537 2.32914 2.29541 3.91072 4.12724

CAGE analysis