Hb_003605_060

Information

Type -
Description -
Location Contig3605: 52847-53575
Sequence    

Annotation

kegg
ID pop:POPTR_0019s11720g
description POPTRDRAFT_574320; hypothetical protein
nr
ID XP_012089674.1
description PREDICTED: ATP synthase subunit delta, chloroplastic [Jatropha curcas]
swissprot
ID P32980
description ATP synthase delta chain, chloroplastic OS=Nicotiana tabacum GN=ATPD PE=2 SV=1
trembl
ID A0A067JS97
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01954 PE=3 SV=1
Gene Ontology
ID GO:0046933
description atp synthase delta chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37131: 52704-53628
cDNA
(Sanger)
(ID:Location)		 004_M24.ab1: 52856-53628 , 014_F13.ab1: 53007-53628

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003605_060 0.0 - - PREDICTED: ATP synthase subunit delta, chloroplastic [Jatropha curcas]
2 Hb_002485_050 0.0457220836 - - PREDICTED: probable plastid-lipid-associated protein 12, chloroplastic [Jatropha curcas]
3 Hb_000856_280 0.0683222318 - - PREDICTED: uncharacterized protein LOC105640491 [Jatropha curcas]
4 Hb_074548_010 0.0709073929 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_009393_130 0.0807991779 - - PREDICTED: uncharacterized protein LOC105638053 isoform X4 [Jatropha curcas]
6 Hb_007803_040 0.0836717336 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic [Jatropha curcas]
7 Hb_002636_030 0.0905888016 - - hypothetical protein JCGZ_11800 [Jatropha curcas]
8 Hb_000479_210 0.0944749846 - - PREDICTED: uncharacterized protein LOC105644126 [Jatropha curcas]
9 Hb_002811_250 0.0952675813 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
10 Hb_000544_070 0.102059795 - - Peptidyl-prolyl cis-trans isomerase FKBP17-2 [Morus notabilis]
11 Hb_003680_060 0.1028641207 - - hypothetical protein VITISV_022322 [Vitis vinifera]
12 Hb_005523_040 0.1033821887 - - PREDICTED: uncharacterized protein LOC100253680 [Vitis vinifera]
13 Hb_091433_050 0.1078642408 - - PREDICTED: uncharacterized protein LOC105646626 [Jatropha curcas]
14 Hb_000002_300 0.1083258626 - - Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis]
15 Hb_000834_060 0.1086233695 - - PREDICTED: probable chlorophyll(ide) b reductase NYC1, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_005210_010 0.1100962306 - - PREDICTED: uncharacterized protein LOC105638163 [Jatropha curcas]
17 Hb_010557_010 0.1107066585 - - PREDICTED: 50S ribosomal protein L3, chloroplastic [Jatropha curcas]
18 Hb_000089_140 0.115214716 - - PREDICTED: uncharacterized protein LOC105636682 isoform X2 [Jatropha curcas]
19 Hb_010721_020 0.1167696989 - - PREDICTED: photosynthetic NDH subunit of lumenal location 4, chloroplastic [Jatropha curcas]
20 Hb_005488_190 0.117435554 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]

Gene co-expression network

sample Hb_003605_060 Hb_003605_060 Hb_002485_050 Hb_002485_050 Hb_003605_060--Hb_002485_050 Hb_000856_280 Hb_000856_280 Hb_003605_060--Hb_000856_280 Hb_074548_010 Hb_074548_010 Hb_003605_060--Hb_074548_010 Hb_009393_130 Hb_009393_130 Hb_003605_060--Hb_009393_130 Hb_007803_040 Hb_007803_040 Hb_003605_060--Hb_007803_040 Hb_002636_030 Hb_002636_030 Hb_003605_060--Hb_002636_030 Hb_002485_050--Hb_007803_040 Hb_002485_050--Hb_000856_280 Hb_000544_070 Hb_000544_070 Hb_002485_050--Hb_000544_070 Hb_002485_050--Hb_074548_010 Hb_002485_050--Hb_009393_130 Hb_000856_280--Hb_007803_040 Hb_005523_040 Hb_005523_040 Hb_000856_280--Hb_005523_040 Hb_005210_010 Hb_005210_010 Hb_000856_280--Hb_005210_010 Hb_001195_290 Hb_001195_290 Hb_000856_280--Hb_001195_290 Hb_074548_010--Hb_005523_040 Hb_074548_010--Hb_000544_070 Hb_074548_010--Hb_002636_030 Hb_005977_040 Hb_005977_040 Hb_074548_010--Hb_005977_040 Hb_003680_060 Hb_003680_060 Hb_009393_130--Hb_003680_060 Hb_009393_130--Hb_007803_040 Hb_009838_070 Hb_009838_070 Hb_009393_130--Hb_009838_070 Hb_010557_010 Hb_010557_010 Hb_009393_130--Hb_010557_010 Hb_002811_250 Hb_002811_250 Hb_009393_130--Hb_002811_250 Hb_005488_190 Hb_005488_190 Hb_007803_040--Hb_005488_190 Hb_007803_040--Hb_000544_070 Hb_091433_050 Hb_091433_050 Hb_002636_030--Hb_091433_050 Hb_000948_120 Hb_000948_120 Hb_002636_030--Hb_000948_120 Hb_002636_030--Hb_000856_280 Hb_010098_040 Hb_010098_040 Hb_002636_030--Hb_010098_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.18831 32.5316 163.791 62.2394 4.69559 4.85066
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.03748 12.7495 3.44927 11.5785 262.348

CAGE analysis