Hb_003605_090

Information

Type transcription factor
Description TF Family: mTERF
Location Contig3605: 66892-68436
Sequence    

Annotation

kegg
ID pop:POPTR_0013s12100g
description mitochondrial transcription termination factor-related family protein
nr
ID XP_012070191.1
description PREDICTED: uncharacterized protein LOC105632419 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L6U0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03930 PE=4 SV=1
Gene Ontology
ID GO:0005739
description mitochondrial transcription termination factor-related family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37134: 66820-68622
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003605_090 0.0 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105632419 [Jatropha curcas]
2 Hb_003697_040 0.048796217 - - hypothetical protein B456_005G209600 [Gossypium raimondii]
3 Hb_000477_060 0.0496589011 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
4 Hb_000703_350 0.053751787 - - PREDICTED: WD repeat-containing protein 26-like [Jatropha curcas]
5 Hb_009615_070 0.0609094015 - - type X protein phosphatase-II [Populus trichocarpa]
6 Hb_004934_100 0.0689903195 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001252_130 0.0708867902 - - PREDICTED: protein YIPF1 homolog [Jatropha curcas]
8 Hb_000016_160 0.0709384111 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48 [Jatropha curcas]
9 Hb_000081_160 0.0711063 - - PREDICTED: uncharacterized protein At4g17910 [Jatropha curcas]
10 Hb_008453_030 0.0722772295 - - Thioredoxin superfamily protein [Theobroma cacao]
11 Hb_003108_020 0.0727558838 - - PREDICTED: transmembrane protein 18 [Jatropha curcas]
12 Hb_024439_010 0.0735330654 - - PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]
13 Hb_005496_140 0.0736040316 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002182_080 0.0751773106 - - 3-5 exonuclease, putative [Ricinus communis]
15 Hb_000363_360 0.075779948 - - hypothetical protein PRUPE_ppa009146mg [Prunus persica]
16 Hb_007009_010 0.0758380764 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At3g05675 [Populus euphratica]
17 Hb_004102_110 0.0760773914 - - Monothiol glutaredoxin-4, putative [Ricinus communis]
18 Hb_000985_030 0.0762077052 - - PREDICTED: RRP15-like protein [Populus euphratica]
19 Hb_004889_010 0.0762812129 - - Vacuolar protein sorting-associated protein-like protein [Medicago truncatula]
20 Hb_000599_250 0.0764214747 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]

Gene co-expression network

sample Hb_003605_090 Hb_003605_090 Hb_003697_040 Hb_003697_040 Hb_003605_090--Hb_003697_040 Hb_000477_060 Hb_000477_060 Hb_003605_090--Hb_000477_060 Hb_000703_350 Hb_000703_350 Hb_003605_090--Hb_000703_350 Hb_009615_070 Hb_009615_070 Hb_003605_090--Hb_009615_070 Hb_004934_100 Hb_004934_100 Hb_003605_090--Hb_004934_100 Hb_001252_130 Hb_001252_130 Hb_003605_090--Hb_001252_130 Hb_003697_040--Hb_000477_060 Hb_003053_020 Hb_003053_020 Hb_003697_040--Hb_003053_020 Hb_003697_040--Hb_004934_100 Hb_004889_010 Hb_004889_010 Hb_003697_040--Hb_004889_010 Hb_000783_020 Hb_000783_020 Hb_003697_040--Hb_000783_020 Hb_000363_360 Hb_000363_360 Hb_000477_060--Hb_000363_360 Hb_000116_270 Hb_000116_270 Hb_000477_060--Hb_000116_270 Hb_000477_060--Hb_004934_100 Hb_000749_220 Hb_000749_220 Hb_000477_060--Hb_000749_220 Hb_005846_040 Hb_005846_040 Hb_000703_350--Hb_005846_040 Hb_001902_140 Hb_001902_140 Hb_000703_350--Hb_001902_140 Hb_004109_170 Hb_004109_170 Hb_000703_350--Hb_004109_170 Hb_001300_150 Hb_001300_150 Hb_000703_350--Hb_001300_150 Hb_012019_010 Hb_012019_010 Hb_000703_350--Hb_012019_010 Hb_023278_020 Hb_023278_020 Hb_009615_070--Hb_023278_020 Hb_007009_010 Hb_007009_010 Hb_009615_070--Hb_007009_010 Hb_009615_070--Hb_004889_010 Hb_004899_370 Hb_004899_370 Hb_009615_070--Hb_004899_370 Hb_089032_030 Hb_089032_030 Hb_009615_070--Hb_089032_030 Hb_000599_250 Hb_000599_250 Hb_004934_100--Hb_000599_250 Hb_008453_030 Hb_008453_030 Hb_004934_100--Hb_008453_030 Hb_001489_080 Hb_001489_080 Hb_004934_100--Hb_001489_080 Hb_000421_220 Hb_000421_220 Hb_004934_100--Hb_000421_220 Hb_000985_030 Hb_000985_030 Hb_004934_100--Hb_000985_030 Hb_005496_140 Hb_005496_140 Hb_001252_130--Hb_005496_140 Hb_000081_160 Hb_000081_160 Hb_001252_130--Hb_000081_160 Hb_001971_010 Hb_001971_010 Hb_001252_130--Hb_001971_010 Hb_001252_130--Hb_000599_250 Hb_000215_110 Hb_000215_110 Hb_001252_130--Hb_000215_110 Hb_000054_090 Hb_000054_090 Hb_001252_130--Hb_000054_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.37777 3.10054 3.37935 6.50006 4.17017 5.5649
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.15803 9.97452 7.77241 4.80424 4.62622

CAGE analysis