Hb_003605_120

Information

Type -
Description -
Location Contig3605: 95625-96260
Sequence    

Annotation

kegg
ID pop:POPTR_0013s12060g
description hypothetical protein
nr
ID XP_006376329.1
description hypothetical protein POPTR_0013s12060g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9MW49
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s12060g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37140: 92951-94684
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003605_120 0.0 - - hypothetical protein POPTR_0013s12060g [Populus trichocarpa]
2 Hb_000390_020 0.1764701668 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 4-like [Jatropha curcas]
3 Hb_025905_010 0.1928804713 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
4 Hb_001414_050 0.1978427364 - - PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g37970 [Jatropha curcas]
5 Hb_006935_040 0.2046248738 - - PREDICTED: uncharacterized protein LOC105629236 [Jatropha curcas]
6 Hb_067197_030 0.2060640222 - - PREDICTED: UPF0187 protein At3g61320, chloroplastic [Jatropha curcas]
7 Hb_001250_040 0.2114827359 - - hypothetical protein CISIN_1g018444mg [Citrus sinensis]
8 Hb_000836_350 0.2183654711 - - PREDICTED: uncharacterized protein LOC105642938 isoform X2 [Jatropha curcas]
9 Hb_004324_210 0.2241792233 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
10 Hb_006846_160 0.2275428738 - - electron transporter, putative [Ricinus communis]
11 Hb_010683_060 0.2279868775 - - hypothetical protein CISIN_1g046469mg, partial [Citrus sinensis]
12 Hb_000808_110 0.2298197301 - - PREDICTED: uncharacterized protein LOC105647448 isoform X4 [Jatropha curcas]
13 Hb_000031_100 0.2304468998 - - amine oxidase, putative [Ricinus communis]
14 Hb_000313_290 0.231904649 - - ABC transporter family protein [Hevea brasiliensis]
15 Hb_001863_340 0.2361401658 - - PREDICTED: probable pectin methyltransferase QUA2 [Jatropha curcas]
16 Hb_001571_030 0.2376244002 - - PREDICTED: uncharacterized protein LOC105640040 isoform X1 [Jatropha curcas]
17 Hb_003683_030 0.2383373473 - - PREDICTED: uridine-cytidine kinase C isoform X1 [Jatropha curcas]
18 Hb_000748_110 0.2386634082 - - Glycosyltransferase QUASIMODO1, putative [Ricinus communis]
19 Hb_004705_070 0.2386768828 - - PREDICTED: uncharacterized protein LOC105647312 isoform X1 [Jatropha curcas]
20 Hb_011609_010 0.2391835246 - - PREDICTED: zinc transporter 5 [Jatropha curcas]

Gene co-expression network

sample Hb_003605_120 Hb_003605_120 Hb_000390_020 Hb_000390_020 Hb_003605_120--Hb_000390_020 Hb_025905_010 Hb_025905_010 Hb_003605_120--Hb_025905_010 Hb_001414_050 Hb_001414_050 Hb_003605_120--Hb_001414_050 Hb_006935_040 Hb_006935_040 Hb_003605_120--Hb_006935_040 Hb_067197_030 Hb_067197_030 Hb_003605_120--Hb_067197_030 Hb_001250_040 Hb_001250_040 Hb_003605_120--Hb_001250_040 Hb_000120_350 Hb_000120_350 Hb_000390_020--Hb_000120_350 Hb_000390_020--Hb_001414_050 Hb_000008_390 Hb_000008_390 Hb_000390_020--Hb_000008_390 Hb_000300_710 Hb_000300_710 Hb_000390_020--Hb_000300_710 Hb_000390_020--Hb_006935_040 Hb_011609_010 Hb_011609_010 Hb_000390_020--Hb_011609_010 Hb_001863_340 Hb_001863_340 Hb_025905_010--Hb_001863_340 Hb_092062_010 Hb_092062_010 Hb_025905_010--Hb_092062_010 Hb_025905_010--Hb_001414_050 Hb_003090_150 Hb_003090_150 Hb_025905_010--Hb_003090_150 Hb_000834_050 Hb_000834_050 Hb_025905_010--Hb_000834_050 Hb_000748_110 Hb_000748_110 Hb_025905_010--Hb_000748_110 Hb_001776_200 Hb_001776_200 Hb_001414_050--Hb_001776_200 Hb_001414_050--Hb_006935_040 Hb_001414_050--Hb_000008_390 Hb_011671_280 Hb_011671_280 Hb_001414_050--Hb_011671_280 Hb_031821_010 Hb_031821_010 Hb_001414_050--Hb_031821_010 Hb_002965_080 Hb_002965_080 Hb_001414_050--Hb_002965_080 Hb_000928_250 Hb_000928_250 Hb_006935_040--Hb_000928_250 Hb_001894_160 Hb_001894_160 Hb_006935_040--Hb_001894_160 Hb_006935_040--Hb_000008_390 Hb_015026_020 Hb_015026_020 Hb_006935_040--Hb_015026_020 Hb_003106_200 Hb_003106_200 Hb_006935_040--Hb_003106_200 Hb_067197_030--Hb_000390_020 Hb_012787_030 Hb_012787_030 Hb_067197_030--Hb_012787_030 Hb_067197_030--Hb_003090_150 Hb_003529_180 Hb_003529_180 Hb_067197_030--Hb_003529_180 Hb_002030_110 Hb_002030_110 Hb_067197_030--Hb_002030_110 Hb_067197_030--Hb_011609_010 Hb_001689_050 Hb_001689_050 Hb_001250_040--Hb_001689_050 Hb_003683_030 Hb_003683_030 Hb_001250_040--Hb_003683_030 Hb_000136_020 Hb_000136_020 Hb_001250_040--Hb_000136_020 Hb_001571_030 Hb_001571_030 Hb_001250_040--Hb_001571_030 Hb_007594_080 Hb_007594_080 Hb_001250_040--Hb_007594_080 Hb_001624_040 Hb_001624_040 Hb_001250_040--Hb_001624_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.552072 0.929641 2.09452 0.853258 0.799739 0.0711757
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.218585 0 0.0595653 1.13811

CAGE analysis