Hb_003605_130

Information

Type -
Description -
Location Contig3605: 96457-100323
Sequence    

Annotation

kegg
ID rcu:RCOM_0664380
description catalytic, putative
nr
ID XP_011002506.1
description PREDICTED: probable arabinosyltransferase ARAD1 [Populus euphratica]
swissprot
ID Q6DBG8
description Probable arabinosyltransferase ARAD1 OS=Arabidopsis thaliana GN=ARAD1 PE=1 SV=1
trembl
ID A0A067KDW4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12702 PE=4 SV=1
Gene Ontology
ID GO:0004553
description probable arabinosyltransferase arad1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37141: 96468-96892 , PASA_asmbl_37142: 96912-99016
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003605_130 0.0 - - PREDICTED: probable arabinosyltransferase ARAD1 [Populus euphratica]
2 Hb_000214_040 0.0413603999 - - conserved hypothetical protein [Ricinus communis]
3 Hb_008864_110 0.0521266874 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
4 Hb_000933_020 0.0575421256 - - conserved hypothetical protein [Ricinus communis]
5 Hb_010193_050 0.0642730298 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002823_030 0.0724664565 - - -
7 Hb_001140_350 0.0725255529 - - PREDICTED: uncharacterized protein LOC105648465 [Jatropha curcas]
8 Hb_001828_160 0.0727814873 - - hypothetical protein F775_31105 [Aegilops tauschii]
9 Hb_000123_090 0.0735493087 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os03g0620400-like [Jatropha curcas]
10 Hb_001454_280 0.0742817696 - - PREDICTED: chaperone protein dnaJ 49 [Jatropha curcas]
11 Hb_003018_130 0.0756150239 - - PREDICTED: uncharacterized protein LOC105628777 [Jatropha curcas]
12 Hb_003680_150 0.0780750734 - - srpk, putative [Ricinus communis]
13 Hb_002835_230 0.0806835267 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
14 Hb_000645_120 0.0813618606 - - PREDICTED: ubiquitin-conjugating enzyme E2 32 [Jatropha curcas]
15 Hb_000320_200 0.082741218 - - PREDICTED: U3 small nucleolar RNA-associated protein 6 homolog [Jatropha curcas]
16 Hb_006620_020 0.0836770775 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
17 Hb_002174_020 0.0839493781 - - ring finger protein, putative [Ricinus communis]
18 Hb_000510_310 0.0842333534 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
19 Hb_000002_490 0.0842426092 - - PREDICTED: uncharacterized protein LOC105632095 [Jatropha curcas]
20 Hb_000959_270 0.0843688465 - - PREDICTED: uncharacterized protein LOC105641005 [Jatropha curcas]

Gene co-expression network

sample Hb_003605_130 Hb_003605_130 Hb_000214_040 Hb_000214_040 Hb_003605_130--Hb_000214_040 Hb_008864_110 Hb_008864_110 Hb_003605_130--Hb_008864_110 Hb_000933_020 Hb_000933_020 Hb_003605_130--Hb_000933_020 Hb_010193_050 Hb_010193_050 Hb_003605_130--Hb_010193_050 Hb_002823_030 Hb_002823_030 Hb_003605_130--Hb_002823_030 Hb_001140_350 Hb_001140_350 Hb_003605_130--Hb_001140_350 Hb_000214_040--Hb_008864_110 Hb_003680_150 Hb_003680_150 Hb_000214_040--Hb_003680_150 Hb_001828_160 Hb_001828_160 Hb_000214_040--Hb_001828_160 Hb_000214_040--Hb_010193_050 Hb_000309_040 Hb_000309_040 Hb_000214_040--Hb_000309_040 Hb_002400_470 Hb_002400_470 Hb_008864_110--Hb_002400_470 Hb_000645_120 Hb_000645_120 Hb_008864_110--Hb_000645_120 Hb_000123_090 Hb_000123_090 Hb_008864_110--Hb_000123_090 Hb_001047_030 Hb_001047_030 Hb_008864_110--Hb_001047_030 Hb_000538_100 Hb_000538_100 Hb_008864_110--Hb_000538_100 Hb_000933_020--Hb_000123_090 Hb_000933_020--Hb_008864_110 Hb_007426_150 Hb_007426_150 Hb_000933_020--Hb_007426_150 Hb_000002_490 Hb_000002_490 Hb_000933_020--Hb_000002_490 Hb_001195_560 Hb_001195_560 Hb_000933_020--Hb_001195_560 Hb_000567_010 Hb_000567_010 Hb_010193_050--Hb_000567_010 Hb_003124_130 Hb_003124_130 Hb_010193_050--Hb_003124_130 Hb_000768_110 Hb_000768_110 Hb_010193_050--Hb_000768_110 Hb_000329_130 Hb_000329_130 Hb_010193_050--Hb_000329_130 Hb_010193_050--Hb_000645_120 Hb_002823_030--Hb_003680_150 Hb_000190_120 Hb_000190_120 Hb_002823_030--Hb_000190_120 Hb_003371_110 Hb_003371_110 Hb_002823_030--Hb_003371_110 Hb_002835_230 Hb_002835_230 Hb_002823_030--Hb_002835_230 Hb_014361_070 Hb_014361_070 Hb_002823_030--Hb_014361_070 Hb_003018_130 Hb_003018_130 Hb_002823_030--Hb_003018_130 Hb_001454_280 Hb_001454_280 Hb_001140_350--Hb_001454_280 Hb_001140_350--Hb_000645_120 Hb_080313_010 Hb_080313_010 Hb_001140_350--Hb_080313_010 Hb_000648_100 Hb_000648_100 Hb_001140_350--Hb_000648_100 Hb_000510_310 Hb_000510_310 Hb_001140_350--Hb_000510_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.83164 5.12866 3.73132 5.18874 9.2274 7.90052
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.47305 4.531 3.67824 4.1451 3.09311

CAGE analysis