Hb_003605_140

Information

Type -
Description -
Location Contig3605: 99863-100270
Sequence    

Annotation

kegg
ID rcu:RCOM_0481330
description hypothetical protein
nr
ID XP_002530929.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SY60
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0481330 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37143: 100021-100276
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003605_140 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_162304_010 0.2284099285 - - conserved hypothetical protein [Ricinus communis]
3 Hb_005015_040 0.2347469833 transcription factor TF Family: FAR1 PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like [Nicotiana sylvestris]
4 Hb_000165_270 0.2378885794 transcription factor TF Family: Tify JAZ10 [Hevea brasiliensis]
5 Hb_000010_450 0.248723918 - - purine permease, putative [Ricinus communis]
6 Hb_136620_010 0.2494186547 - - PREDICTED: mechanosensitive ion channel protein 10-like [Jatropha curcas]
7 Hb_000206_080 0.2515149493 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
8 Hb_003147_020 0.2518433616 - - hypothetical protein POPTR_0019s07690g [Populus trichocarpa]
9 Hb_009554_020 0.2577985242 - - PREDICTED: em-like protein GEA6 [Sesamum indicum]
10 Hb_000069_250 0.2611380158 - - hypothetical protein JCGZ_14250 [Jatropha curcas]
11 Hb_148146_030 0.2620017077 - - PREDICTED: uncharacterized protein LOC105649266 [Jatropha curcas]
12 Hb_010672_040 0.2632358993 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]
13 Hb_002693_040 0.2658294816 - - hypersensitive-induced response protein [Carica papaya]
14 Hb_078641_020 0.2658701955 - - Pectinesterase-2 precursor, putative [Ricinus communis]
15 Hb_003411_080 0.266049015 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000006_020 0.267402872 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000015_240 0.267402872 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000016_090 0.267402872 - - -
19 Hb_000016_240 0.267402872 transcription factor TF Family: LOB hypothetical protein POPTR_0012s13910g [Populus trichocarpa]
20 Hb_000028_020 0.267402872 - - -

Gene co-expression network

sample Hb_003605_140 Hb_003605_140 Hb_162304_010 Hb_162304_010 Hb_003605_140--Hb_162304_010 Hb_005015_040 Hb_005015_040 Hb_003605_140--Hb_005015_040 Hb_000165_270 Hb_000165_270 Hb_003605_140--Hb_000165_270 Hb_000010_450 Hb_000010_450 Hb_003605_140--Hb_000010_450 Hb_136620_010 Hb_136620_010 Hb_003605_140--Hb_136620_010 Hb_000206_080 Hb_000206_080 Hb_003605_140--Hb_000206_080 Hb_162304_010--Hb_005015_040 Hb_009554_020 Hb_009554_020 Hb_162304_010--Hb_009554_020 Hb_007970_030 Hb_007970_030 Hb_162304_010--Hb_007970_030 Hb_148146_030 Hb_148146_030 Hb_162304_010--Hb_148146_030 Hb_182291_020 Hb_182291_020 Hb_162304_010--Hb_182291_020 Hb_000116_340 Hb_000116_340 Hb_162304_010--Hb_000116_340 Hb_005015_040--Hb_009554_020 Hb_005015_040--Hb_148146_030 Hb_005015_040--Hb_136620_010 Hb_005015_040--Hb_007970_030 Hb_005015_040--Hb_182291_020 Hb_005015_040--Hb_000206_080 Hb_001433_120 Hb_001433_120 Hb_000165_270--Hb_001433_120 Hb_007218_010 Hb_007218_010 Hb_000165_270--Hb_007218_010 Hb_010672_040 Hb_010672_040 Hb_000165_270--Hb_010672_040 Hb_007157_050 Hb_007157_050 Hb_000165_270--Hb_007157_050 Hb_000347_160 Hb_000347_160 Hb_000165_270--Hb_000347_160 Hb_005854_060 Hb_005854_060 Hb_000165_270--Hb_005854_060 Hb_004324_230 Hb_004324_230 Hb_000010_450--Hb_004324_230 Hb_004228_060 Hb_004228_060 Hb_000010_450--Hb_004228_060 Hb_003638_060 Hb_003638_060 Hb_000010_450--Hb_003638_060 Hb_000592_120 Hb_000592_120 Hb_000010_450--Hb_000592_120 Hb_078641_020 Hb_078641_020 Hb_000010_450--Hb_078641_020 Hb_136620_010--Hb_000206_080 Hb_003411_080 Hb_003411_080 Hb_136620_010--Hb_003411_080 Hb_002028_230 Hb_002028_230 Hb_136620_010--Hb_002028_230 Hb_136620_010--Hb_005854_060 Hb_136620_010--Hb_001433_120 Hb_149407_010 Hb_149407_010 Hb_136620_010--Hb_149407_010 Hb_000206_080--Hb_003411_080 Hb_000206_080--Hb_002028_230 Hb_000206_080--Hb_149407_010 Hb_162008_030 Hb_162008_030 Hb_000206_080--Hb_162008_030 Hb_000206_080--Hb_005854_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0810476 0.141843 3.37069 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.242703 0.064345 0

CAGE analysis