Hb_003605_170

Information

Type -
Description -
Location Contig3605: 118588-120510
Sequence    

Annotation

kegg
ID pop:POPTR_0013s12020g
description hypothetical protein
nr
ID XP_006376325.1
description hypothetical protein POPTR_0013s12020g [Populus trichocarpa]
swissprot
ID Q9FVV1
description GDSL esterase/lipase At1g71250 OS=Arabidopsis thaliana GN=At1g71250 PE=2 SV=1
trembl
ID B9MW53
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s12020g PE=4 SV=1
Gene Ontology
ID GO:0016788
description gdsl esterase lipase at1g29670-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37152: 118642-120661 , PASA_asmbl_37153: 118642-120661
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003605_170 0.0 - - hypothetical protein POPTR_0013s12020g [Populus trichocarpa]
2 Hb_003836_040 0.018544813 - - PREDICTED: cytochrome P450 77A3-like [Jatropha curcas]
3 Hb_000210_020 0.0375143276 transcription factor TF Family: OFP Ovate family protein 13, putative [Theobroma cacao]
4 Hb_002284_290 0.0382308023 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
5 Hb_005797_020 0.0388532541 - - PREDICTED: BAG family molecular chaperone regulator 1-like [Jatropha curcas]
6 Hb_000053_010 0.0394547377 - - hypothetical protein PRUPE_ppa017696mg [Prunus persica]
7 Hb_000977_250 0.0403612525 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
8 Hb_000174_120 0.0410804927 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
9 Hb_011433_010 0.0416975996 - - PREDICTED: (R)-mandelonitrile lyase-like [Populus euphratica]
10 Hb_000297_190 0.0422781223 - - cell wall invertase [Manihot esculenta]
11 Hb_002434_040 0.044573676 - - hypothetical protein CICLE_v10022672mg [Citrus clementina]
12 Hb_014361_160 0.0457979741 transcription factor TF Family: GRAS SCL domain class transcription factor [Theobroma cacao]
13 Hb_000834_160 0.0492869166 - - hypothetical protein JCGZ_07239 [Jatropha curcas]
14 Hb_009692_050 0.0499681237 - - -
15 Hb_023313_050 0.0502206028 transcription factor TF Family: Rcd1-like PREDICTED: cell differentiation protein rcd1-like [Jatropha curcas]
16 Hb_000414_040 0.0508180834 - - hypothetical protein POPTR_0009s13250g [Populus trichocarpa]
17 Hb_003598_070 0.0511643324 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001170_020 0.0519511656 - - conserved hypothetical protein [Ricinus communis]
19 Hb_005888_020 0.0556560041 - - PREDICTED: uncharacterized protein LOC105127729 [Populus euphratica]
20 Hb_171810_030 0.0591475162 - - PREDICTED: oligopeptide transporter 6-like [Jatropha curcas]

Gene co-expression network

sample Hb_003605_170 Hb_003605_170 Hb_003836_040 Hb_003836_040 Hb_003605_170--Hb_003836_040 Hb_000210_020 Hb_000210_020 Hb_003605_170--Hb_000210_020 Hb_002284_290 Hb_002284_290 Hb_003605_170--Hb_002284_290 Hb_005797_020 Hb_005797_020 Hb_003605_170--Hb_005797_020 Hb_000053_010 Hb_000053_010 Hb_003605_170--Hb_000053_010 Hb_000977_250 Hb_000977_250 Hb_003605_170--Hb_000977_250 Hb_003836_040--Hb_002284_290 Hb_003836_040--Hb_000210_020 Hb_000174_120 Hb_000174_120 Hb_003836_040--Hb_000174_120 Hb_003836_040--Hb_005797_020 Hb_000834_160 Hb_000834_160 Hb_003836_040--Hb_000834_160 Hb_000210_020--Hb_002284_290 Hb_000210_020--Hb_005797_020 Hb_000210_020--Hb_000053_010 Hb_004464_040 Hb_004464_040 Hb_000210_020--Hb_004464_040 Hb_003598_070 Hb_003598_070 Hb_002284_290--Hb_003598_070 Hb_009692_050 Hb_009692_050 Hb_002284_290--Hb_009692_050 Hb_002284_290--Hb_000834_160 Hb_147976_010 Hb_147976_010 Hb_002284_290--Hb_147976_010 Hb_000414_040 Hb_000414_040 Hb_005797_020--Hb_000414_040 Hb_011433_010 Hb_011433_010 Hb_005797_020--Hb_011433_010 Hb_005797_020--Hb_000174_120 Hb_014361_160 Hb_014361_160 Hb_005797_020--Hb_014361_160 Hb_005797_020--Hb_009692_050 Hb_002434_040 Hb_002434_040 Hb_000053_010--Hb_002434_040 Hb_023313_050 Hb_023313_050 Hb_000053_010--Hb_023313_050 Hb_000053_010--Hb_014361_160 Hb_000053_010--Hb_000977_250 Hb_171810_030 Hb_171810_030 Hb_000053_010--Hb_171810_030 Hb_000053_010--Hb_011433_010 Hb_000977_250--Hb_002434_040 Hb_000977_250--Hb_023313_050 Hb_001170_020 Hb_001170_020 Hb_000977_250--Hb_001170_020 Hb_000977_250--Hb_014361_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0139314 14.6881 3.10038 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0120638 13.2588

CAGE analysis