Hb_003607_030

Information

Type transcription factor
Description TF Family: B3
Location Contig3607: 65757-68425
Sequence    

Annotation

kegg
ID pop:POPTR_0002s25330g
description POPTRDRAFT_408900; ABA insensitive 3 family protein
nr
ID XP_012085841.1
description PREDICTED: B3 domain-containing transcription factor ABI3 [Jatropha curcas]
swissprot
ID Q01593
description B3 domain-containing transcription factor ABI3 OS=Arabidopsis thaliana GN=ABI3 PE=1 SV=1
trembl
ID R4TV46
description ABI3 OS=Populus tomentosa PE=4 SV=1
Gene Ontology
ID GO:0005634
description b3 domain-containing transcription factor abi3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003607_030 0.0 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor ABI3 [Jatropha curcas]
2 Hb_009693_040 0.0106166917 - - PREDICTED: serine/threonine-protein kinase At3g07070 [Brassica rapa]
3 Hb_007963_050 0.0173178361 - - -
4 Hb_000953_150 0.0827689157 - - -
5 Hb_000098_280 0.0894032101 - - PREDICTED: pentatricopeptide repeat-containing protein At1g33350 [Jatropha curcas]
6 Hb_000926_220 0.095938322 - - -
7 Hb_080765_020 0.1035696329 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
8 Hb_046727_010 0.106744152 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
9 Hb_017836_010 0.1071676106 - - PREDICTED: Werner Syndrome-like exonuclease [Jatropha curcas]
10 Hb_007008_020 0.1270722444 - - -
11 Hb_000100_050 0.1519564327 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
12 Hb_011978_010 0.1526888143 - - hypothetical protein JCGZ_03852 [Jatropha curcas]
13 Hb_000375_380 0.1530448995 - - -
14 Hb_004324_380 0.1564872792 - - -
15 Hb_027393_020 0.1683220688 - - -
16 Hb_095413_040 0.1762538927 - - -
17 Hb_158990_010 0.2164704171 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
18 Hb_000922_310 0.2351606122 transcription factor TF Family: MYB PREDICTED: transcription factor MYB98-like [Jatropha curcas]
19 Hb_002163_060 0.2464264659 - - -
20 Hb_049438_010 0.249544285 - - -

Gene co-expression network

sample Hb_003607_030 Hb_003607_030 Hb_009693_040 Hb_009693_040 Hb_003607_030--Hb_009693_040 Hb_007963_050 Hb_007963_050 Hb_003607_030--Hb_007963_050 Hb_000953_150 Hb_000953_150 Hb_003607_030--Hb_000953_150 Hb_000098_280 Hb_000098_280 Hb_003607_030--Hb_000098_280 Hb_000926_220 Hb_000926_220 Hb_003607_030--Hb_000926_220 Hb_080765_020 Hb_080765_020 Hb_003607_030--Hb_080765_020 Hb_009693_040--Hb_007963_050 Hb_009693_040--Hb_000953_150 Hb_009693_040--Hb_000098_280 Hb_009693_040--Hb_080765_020 Hb_046727_010 Hb_046727_010 Hb_009693_040--Hb_046727_010 Hb_007963_050--Hb_000953_150 Hb_007963_050--Hb_000098_280 Hb_007963_050--Hb_080765_020 Hb_007963_050--Hb_046727_010 Hb_000953_150--Hb_000098_280 Hb_000953_150--Hb_080765_020 Hb_000953_150--Hb_046727_010 Hb_007008_020 Hb_007008_020 Hb_000953_150--Hb_007008_020 Hb_000100_050 Hb_000100_050 Hb_000953_150--Hb_000100_050 Hb_000098_280--Hb_080765_020 Hb_000098_280--Hb_046727_010 Hb_000098_280--Hb_007008_020 Hb_000098_280--Hb_000100_050 Hb_011978_010 Hb_011978_010 Hb_000098_280--Hb_011978_010 Hb_017836_010 Hb_017836_010 Hb_000926_220--Hb_017836_010 Hb_095413_040 Hb_095413_040 Hb_000926_220--Hb_095413_040 Hb_000926_220--Hb_009693_040 Hb_000926_220--Hb_007963_050 Hb_049438_010 Hb_049438_010 Hb_000926_220--Hb_049438_010 Hb_080765_020--Hb_046727_010 Hb_080765_020--Hb_007008_020 Hb_080765_020--Hb_000100_050 Hb_080765_020--Hb_011978_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0210127 0 0 0 0.00939452 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis