Hb_003607_170

Information

Type -
Description -
Location Contig3607: 151377-155211
Sequence    

Annotation

kegg
ID cam:101496347
description U6 snRNA-associated Sm-like protein LSm5-like
nr
ID ADR71256.1
description U6 snRNA-associated Sm-like protein LSm5 [Hevea brasiliensis]
swissprot
ID Q9FKB0
description Sm-like protein LSM5 OS=Arabidopsis thaliana GN=LSM5 PE=1 SV=1
trembl
ID I3NML9
description U6 snRNA-associated Sm-like protein LSm5 OS=Hevea brasiliensis GN=LSm5 PE=2 SV=1
Gene Ontology
ID GO:0019013
description u6 snrna-associated sm-like protein lsm5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37176: 151323-155162 , PASA_asmbl_37177: 153755-154093
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003607_170 0.0 - - U6 snRNA-associated Sm-like protein LSm5 [Hevea brasiliensis]
2 Hb_003988_040 0.0850942657 - - PREDICTED: uncharacterized protein LOC105633684 [Jatropha curcas]
3 Hb_000617_090 0.0954313709 - - hypoia-responsive family protein 4 [Hevea brasiliensis]
4 Hb_008847_020 0.0973152098 - - 40S ribosomal protein S17C [Hevea brasiliensis]
5 Hb_010883_150 0.0984810152 - - Ubiquitin-fold modifier 1 precursor, putative [Ricinus communis]
6 Hb_000526_150 0.0996112512 - - hypothetical protein POPTR_0019s10790g, partial [Populus trichocarpa]
7 Hb_005463_060 0.1026797004 - - PREDICTED: uncharacterized protein LOC105632515 [Jatropha curcas]
8 Hb_001269_270 0.1029135728 - - 60S ribosomal protein L27B [Hevea brasiliensis]
9 Hb_000212_470 0.1056393058 - - hypothetical protein CICLE_v10033256mg [Citrus clementina]
10 Hb_000312_090 0.1060355411 - - PREDICTED: uncharacterized protein LOC105645369 [Jatropha curcas]
11 Hb_002897_080 0.1070797808 - - hypothetical protein JCGZ_03306 [Jatropha curcas]
12 Hb_026398_010 0.1077736902 - - hypothetical protein B456_010G132100 [Gossypium raimondii]
13 Hb_000975_250 0.1110195479 - - PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like [Jatropha curcas]
14 Hb_001045_080 0.1150055425 - - PREDICTED: uncharacterized protein LOC105646704 [Jatropha curcas]
15 Hb_002781_020 0.1156380849 - - PREDICTED: uncharacterized protein LOC105644398 isoform X2 [Jatropha curcas]
16 Hb_003226_220 0.1161174555 - - hypothetical protein CICLE_v10022836mg [Citrus clementina]
17 Hb_003125_150 0.1171683282 - - PREDICTED: protein transport protein Sec61 subunit gamma [Jatropha curcas]
18 Hb_001638_260 0.1208338984 - - PREDICTED: 60S acidic ribosomal protein P1 [Vitis vinifera]
19 Hb_000134_020 0.1214258996 - - thioredoxin-like family protein [Hevea brasiliensis]
20 Hb_000645_190 0.1215066647 - - PREDICTED: 60S ribosomal protein L29-1-like [Glycine max]

Gene co-expression network

sample Hb_003607_170 Hb_003607_170 Hb_003988_040 Hb_003988_040 Hb_003607_170--Hb_003988_040 Hb_000617_090 Hb_000617_090 Hb_003607_170--Hb_000617_090 Hb_008847_020 Hb_008847_020 Hb_003607_170--Hb_008847_020 Hb_010883_150 Hb_010883_150 Hb_003607_170--Hb_010883_150 Hb_000526_150 Hb_000526_150 Hb_003607_170--Hb_000526_150 Hb_005463_060 Hb_005463_060 Hb_003607_170--Hb_005463_060 Hb_003988_040--Hb_005463_060 Hb_000159_070 Hb_000159_070 Hb_003988_040--Hb_000159_070 Hb_002897_080 Hb_002897_080 Hb_003988_040--Hb_002897_080 Hb_000134_020 Hb_000134_020 Hb_003988_040--Hb_000134_020 Hb_000312_090 Hb_000312_090 Hb_003988_040--Hb_000312_090 Hb_000617_090--Hb_000312_090 Hb_001269_270 Hb_001269_270 Hb_000617_090--Hb_001269_270 Hb_003226_210 Hb_003226_210 Hb_000617_090--Hb_003226_210 Hb_026398_010 Hb_026398_010 Hb_000617_090--Hb_026398_010 Hb_001221_310 Hb_001221_310 Hb_000617_090--Hb_001221_310 Hb_003125_150 Hb_003125_150 Hb_000617_090--Hb_003125_150 Hb_002781_020 Hb_002781_020 Hb_008847_020--Hb_002781_020 Hb_008847_020--Hb_010883_150 Hb_000199_070 Hb_000199_070 Hb_008847_020--Hb_000199_070 Hb_000184_050 Hb_000184_050 Hb_008847_020--Hb_000184_050 Hb_000212_470 Hb_000212_470 Hb_008847_020--Hb_000212_470 Hb_008847_020--Hb_000526_150 Hb_001584_070 Hb_001584_070 Hb_010883_150--Hb_001584_070 Hb_010883_150--Hb_000526_150 Hb_000840_190 Hb_000840_190 Hb_010883_150--Hb_000840_190 Hb_002311_320 Hb_002311_320 Hb_010883_150--Hb_002311_320 Hb_000061_330 Hb_000061_330 Hb_010883_150--Hb_000061_330 Hb_000526_150--Hb_001269_270 Hb_001638_260 Hb_001638_260 Hb_000526_150--Hb_001638_260 Hb_009851_100 Hb_009851_100 Hb_000526_150--Hb_009851_100 Hb_000545_150 Hb_000545_150 Hb_000526_150--Hb_000545_150 Hb_000634_050 Hb_000634_050 Hb_000526_150--Hb_000634_050 Hb_001818_020 Hb_001818_020 Hb_000526_150--Hb_001818_020 Hb_005463_060--Hb_002897_080 Hb_003226_220 Hb_003226_220 Hb_005463_060--Hb_003226_220 Hb_003638_080 Hb_003638_080 Hb_005463_060--Hb_003638_080 Hb_000046_260 Hb_000046_260 Hb_005463_060--Hb_000046_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
167.916 36.3943 55.0434 94.0755 54.7996 202.593
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
359.889 487.893 102.868 89.386 22.9789

CAGE analysis