Hb_003609_010

Information

Type -
Description -
Location Contig3609: 11324-11682
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003609_010 0.0 - - -
2 Hb_000563_220 0.2167054761 - - hypothetical protein VITISV_004111 [Vitis vinifera]
3 Hb_083569_010 0.2491117187 - - -
4 Hb_094101_010 0.2571745687 - - hypothetical protein JCGZ_18414 [Jatropha curcas]
5 Hb_002904_090 0.2606188579 - - PREDICTED: pentatricopeptide repeat-containing protein At1g71420-like [Vitis vinifera]
6 Hb_000317_090 0.2639403222 - - hypothetical protein RCOM_1176360 [Ricinus communis]
7 Hb_007904_190 0.2645359521 - - -
8 Hb_000014_130 0.2660449752 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
9 Hb_041237_010 0.2704678119 - - conserved hypothetical protein [Ricinus communis]
10 Hb_024828_040 0.2727088252 - - -
11 Hb_003816_020 0.2739375484 - - hypothetical protein POPTR_0017s05940g [Populus trichocarpa]
12 Hb_003398_010 0.2769252192 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
13 Hb_007978_020 0.284084123 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA1-like [Jatropha curcas]
14 Hb_001276_010 0.2910238852 desease resistance Gene Name: NB-ARC unnamed protein product [Vitis vinifera]
15 Hb_032018_010 0.2916251964 - - PREDICTED: uncharacterized protein LOC105778873 [Gossypium raimondii]
16 Hb_171659_010 0.2973582126 - - PREDICTED: uncharacterized protein LOC104903214 [Beta vulgaris subsp. vulgaris]
17 Hb_004534_020 0.3000914104 - - PREDICTED: cysteine proteinase inhibitor B [Jatropha curcas]
18 Hb_093245_010 0.3018833092 - - -
19 Hb_022452_010 0.3023821931 - - -
20 Hb_000062_500 0.3025317452 - - PREDICTED: urease-like [Zea mays]

Gene co-expression network

sample Hb_003609_010 Hb_003609_010 Hb_000563_220 Hb_000563_220 Hb_003609_010--Hb_000563_220 Hb_083569_010 Hb_083569_010 Hb_003609_010--Hb_083569_010 Hb_094101_010 Hb_094101_010 Hb_003609_010--Hb_094101_010 Hb_002904_090 Hb_002904_090 Hb_003609_010--Hb_002904_090 Hb_000317_090 Hb_000317_090 Hb_003609_010--Hb_000317_090 Hb_007904_190 Hb_007904_190 Hb_003609_010--Hb_007904_190 Hb_000563_220--Hb_083569_010 Hb_000563_220--Hb_094101_010 Hb_024828_040 Hb_024828_040 Hb_000563_220--Hb_024828_040 Hb_000563_220--Hb_002904_090 Hb_179763_020 Hb_179763_020 Hb_000563_220--Hb_179763_020 Hb_083569_010--Hb_094101_010 Hb_021583_010 Hb_021583_010 Hb_083569_010--Hb_021583_010 Hb_009780_090 Hb_009780_090 Hb_083569_010--Hb_009780_090 Hb_003311_050 Hb_003311_050 Hb_083569_010--Hb_003311_050 Hb_001414_130 Hb_001414_130 Hb_094101_010--Hb_001414_130 Hb_094101_010--Hb_003311_050 Hb_094101_010--Hb_009780_090 Hb_094101_010--Hb_021583_010 Hb_000928_150 Hb_000928_150 Hb_094101_010--Hb_000928_150 Hb_019282_010 Hb_019282_010 Hb_002904_090--Hb_019282_010 Hb_001427_180 Hb_001427_180 Hb_002904_090--Hb_001427_180 Hb_176117_010 Hb_176117_010 Hb_002904_090--Hb_176117_010 Hb_000014_130 Hb_000014_130 Hb_002904_090--Hb_000014_130 Hb_000331_500 Hb_000331_500 Hb_002904_090--Hb_000331_500 Hb_041237_010 Hb_041237_010 Hb_002904_090--Hb_041237_010 Hb_002837_090 Hb_002837_090 Hb_000317_090--Hb_002837_090 Hb_001276_010 Hb_001276_010 Hb_000317_090--Hb_001276_010 Hb_003772_080 Hb_003772_080 Hb_000317_090--Hb_003772_080 Hb_171659_010 Hb_171659_010 Hb_000317_090--Hb_171659_010 Hb_022452_010 Hb_022452_010 Hb_000317_090--Hb_022452_010 Hb_003816_020 Hb_003816_020 Hb_000317_090--Hb_003816_020 Hb_007904_190--Hb_000014_130 Hb_007904_190--Hb_002837_090 Hb_004534_020 Hb_004534_020 Hb_007904_190--Hb_004534_020 Hb_165078_010 Hb_165078_010 Hb_007904_190--Hb_165078_010 Hb_007904_190--Hb_024828_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.450101 0.467788 0 0 0.347368 0.56908
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.229419 0 0 0

CAGE analysis