Hb_003609_030

Information

Type -
Description -
Location Contig3609: 29252-37117
Sequence    

Annotation

kegg
ID rcu:RCOM_0182010
description breast carcinoma amplified sequence, putative
nr
ID XP_012070728.1
description PREDICTED: autophagy-related protein 18f [Jatropha curcas]
swissprot
ID Q9FH32
description Autophagy-related protein 18f OS=Arabidopsis thaliana GN=ATG18F PE=2 SV=1
trembl
ID A0A067KS46
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00803 PE=4 SV=1
Gene Ontology
ID GO:0016036
description autophagy-related protein 18f

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37181: 29330-36928
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003609_030 0.0 - - PREDICTED: autophagy-related protein 18f [Jatropha curcas]
2 Hb_005993_050 0.0614562704 - - Protein AFR, putative [Ricinus communis]
3 Hb_000562_090 0.0622077518 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 6 [Jatropha curcas]
4 Hb_001252_010 0.065318102 - - hypothetical protein JCGZ_01389 [Jatropha curcas]
5 Hb_031527_020 0.0682487318 - - PREDICTED: pre-mRNA-splicing factor 38B isoform X1 [Jatropha curcas]
6 Hb_000179_030 0.0683691017 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
7 Hb_000502_050 0.0685797118 transcription factor TF Family: HSF Heat shock factor protein HSF8, putative [Ricinus communis]
8 Hb_000002_040 0.0688549731 - - hypothetical protein JCGZ_01511 [Jatropha curcas]
9 Hb_000336_250 0.0692651991 transcription factor TF Family: mTERF hypothetical protein B456_002G027700 [Gossypium raimondii]
10 Hb_020000_020 0.0716717695 - - Troponin C, skeletal muscle, putative [Ricinus communis]
11 Hb_005532_050 0.0733629666 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
12 Hb_000544_090 0.0756803896 - - PREDICTED: golgin candidate 2 [Jatropha curcas]
13 Hb_000107_500 0.0769025483 - - PREDICTED: protein FAR1-RELATED SEQUENCE 9 [Jatropha curcas]
14 Hb_002671_140 0.0771383461 - - calcium-dependent protein kinase [Hevea brasiliensis]
15 Hb_003680_150 0.077512787 - - srpk, putative [Ricinus communis]
16 Hb_045793_010 0.0775193527 - - PREDICTED: putative disease resistance protein RGA3 [Pyrus x bretschneideri]
17 Hb_002163_030 0.0778244917 - - PREDICTED: serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform [Jatropha curcas]
18 Hb_006831_110 0.0778916367 - - PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like [Jatropha curcas]
19 Hb_000077_230 0.0782581483 - - PREDICTED: uncharacterized protein LOC105646947 [Jatropha curcas]
20 Hb_001926_030 0.0794796098 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]

Gene co-expression network

sample Hb_003609_030 Hb_003609_030 Hb_005993_050 Hb_005993_050 Hb_003609_030--Hb_005993_050 Hb_000562_090 Hb_000562_090 Hb_003609_030--Hb_000562_090 Hb_001252_010 Hb_001252_010 Hb_003609_030--Hb_001252_010 Hb_031527_020 Hb_031527_020 Hb_003609_030--Hb_031527_020 Hb_000179_030 Hb_000179_030 Hb_003609_030--Hb_000179_030 Hb_000502_050 Hb_000502_050 Hb_003609_030--Hb_000502_050 Hb_000029_050 Hb_000029_050 Hb_005993_050--Hb_000029_050 Hb_138596_010 Hb_138596_010 Hb_005993_050--Hb_138596_010 Hb_004055_150 Hb_004055_150 Hb_005993_050--Hb_004055_150 Hb_003680_150 Hb_003680_150 Hb_005993_050--Hb_003680_150 Hb_000853_230 Hb_000853_230 Hb_005993_050--Hb_000853_230 Hb_002671_140 Hb_002671_140 Hb_000562_090--Hb_002671_140 Hb_008643_210 Hb_008643_210 Hb_000562_090--Hb_008643_210 Hb_013399_100 Hb_013399_100 Hb_000562_090--Hb_013399_100 Hb_003464_050 Hb_003464_050 Hb_000562_090--Hb_003464_050 Hb_000915_020 Hb_000915_020 Hb_000562_090--Hb_000915_020 Hb_001595_030 Hb_001595_030 Hb_001252_010--Hb_001595_030 Hb_008803_090 Hb_008803_090 Hb_001252_010--Hb_008803_090 Hb_000125_170 Hb_000125_170 Hb_001252_010--Hb_000125_170 Hb_002027_260 Hb_002027_260 Hb_001252_010--Hb_002027_260 Hb_005532_050 Hb_005532_050 Hb_001252_010--Hb_005532_050 Hb_005489_080 Hb_005489_080 Hb_031527_020--Hb_005489_080 Hb_003785_040 Hb_003785_040 Hb_031527_020--Hb_003785_040 Hb_111198_010 Hb_111198_010 Hb_031527_020--Hb_111198_010 Hb_000732_120 Hb_000732_120 Hb_031527_020--Hb_000732_120 Hb_000336_250 Hb_000336_250 Hb_031527_020--Hb_000336_250 Hb_006355_010 Hb_006355_010 Hb_000179_030--Hb_006355_010 Hb_008159_020 Hb_008159_020 Hb_000179_030--Hb_008159_020 Hb_023386_040 Hb_023386_040 Hb_000179_030--Hb_023386_040 Hb_005914_060 Hb_005914_060 Hb_000179_030--Hb_005914_060 Hb_001486_340 Hb_001486_340 Hb_000179_030--Hb_001486_340 Hb_000308_030 Hb_000308_030 Hb_000179_030--Hb_000308_030 Hb_000502_050--Hb_003785_040 Hb_009411_010 Hb_009411_010 Hb_000502_050--Hb_009411_010 Hb_010222_050 Hb_010222_050 Hb_000502_050--Hb_010222_050 Hb_000502_050--Hb_005993_050 Hb_000574_440 Hb_000574_440 Hb_000502_050--Hb_000574_440 Hb_009503_030 Hb_009503_030 Hb_000502_050--Hb_009503_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.0622 27.4029 14.8557 14.9209 23.0669 33.8523
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.0231 19.14 20.6845 14.1623 14.2453

CAGE analysis